Tk06512, Tk06512 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk06512
Unique NameTk06512
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length339
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005819Histone H5PRINTSPR00624HISTONEH5coord: 112..126
score: 48.89
coord: 6..27
score: 36.87
coord: 145..162
score: 46.91
coord: 75..99
score: 45.33
coord: 33..50
score: 54.32
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 169..235
e-value: 2.4E-30
score: 116.8
coord: 17..83
e-value: 2.4E-30
score: 116.8
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 20..91
e-value: 1.2E-30
score: 105.6
coord: 172..243
e-value: 1.2E-30
score: 105.6
IPR005818Linker histone H1/H5, domain H15PROSITEPS51504H15coord: 19..93
score: 34.181
IPR005818Linker histone H1/H5, domain H15PROSITEPS51504H15coord: 171..245
score: 34.181
IPR005818Linker histone H1/H5, domain H15CDDcd00073H15coord: 171..246
e-value: 4.18021E-26
score: 97.3067
IPR005818Linker histone H1/H5, domain H15CDDcd00073H15coord: 19..92
e-value: 6.75257E-26
score: 96.9215
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 170..244
e-value: 4.4E-30
score: 105.6
coord: 18..92
e-value: 4.4E-30
score: 105.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..339
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..339
NoneNo IPR availablePANTHERPTHR11467HISTONE H1/H5coord: 7..168
coord: 170..337
NoneNo IPR availablePANTHERPTHR11467:SF90HISTONE H1coord: 170..337
NoneNo IPR availablePANTHERPTHR11467:SF90HISTONE H1coord: 7..168
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 18..105
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 166..248

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold172_size289735-snap-gene-0.17-mRNA-1maker-scaffold172_size289735-snap-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk06512 ID=Tk06512|Name=Tk06512|organism=Tigriopus kingsejongensis|type=polypeptide|length=339bp
MPDSPAKTKKVAKPKAAATHPPTSVMVMAAVRALKERNGSSLPAIKKYIA
ANYKVDVAKNAHFIKKAVKSLVEKKKLTQPKGTGASGSFKIPTAVKVEKT
KVVKPKKVKTPKKKTATKKVAGEKKAKSPKKKTPAKKAATKKVEKPAVVA
KKPKTPKKKPAKVAKPKAAATHPPTSVMVMAAVRALKERNGSSLPAIKKY
IAANYKVDVAKNAHFIKKAVKSLVEKKKLTQPKGTGASGSFKIPTAVKVE
KTKVVKPKKAKTPKKKTATKKVAGEKKAKSPKKKTPAKKAATKKVEKPAV
VAKKPKTPKKKPAVKKAAPAKKTPAKKTSPKKRGAPKKK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005819Histone_H5
IPR005818Histone_H1/H5_H15
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
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