Tk06860, Tk06860 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk06860
Unique NameTk06860
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length600
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 249..282
e-value: 62.0
score: 8.0
coord: 319..352
e-value: 0.54
score: 19.3
coord: 126..159
e-value: 0.011
score: 24.9
coord: 517..550
e-value: 470.0
score: 0.3
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 517..550
score: 5.517
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 59..92
score: 5.369
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 126..159
score: 10.886
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 319..352
score: 6.284
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 433..583
e-value: 6.2E-5
score: 25.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 74..227
e-value: 5.5E-16
score: 60.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 228..430
e-value: 1.0E-12
score: 49.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 237..360
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 76..196
coord: 232..277
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 452..563
coord: 315..356
IPR039226Ski3/TTC37PANTHERPTHR15704SUPERKILLER 3 PROTEIN-RELATEDcoord: 63..563
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 59..600
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..58
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 126..193
score: 11.551
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 319..352
score: 6.802
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 59..126
score: 6.802

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold176_size284796-snap-gene-1.23-mRNA-1maker-scaffold176_size284796-snap-gene-1.23-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk06860 ID=Tk06860|Name=Tk06860|organism=Tigriopus kingsejongensis|type=polypeptide|length=600bp
MPKLKKRQSLSEQFRTFCLQTSLHGWQYIVEKPASAWRNAFWAIIVTLSM
VTAGTFLYNNTWAESGTSEEQALLRQRATVAIKKAIKLQPKGHSHWSLFG
VVALKAENYALAQHAFIRSIEAENNAMAWTNLGILYLMKGEQELANKSFQ
EAQNHDPSYLRGWVGQAILAETMAYHSEAMDLFRHACFLGNEPEASIGYA
NWICKTMKSLEDQNNPTHAHNVYCIKNMFGVSVASDCLTRYTEIVPDDAC
ALNMLGVLLEREGVLQPSRKALEKALSVVSTIGQRDWEASIRINLARVGF
KLHDYSGSIGHYSLLPPSFPVLCGLAISHYKVGHFQESYVSYQSALNLAG
SNEEKSHVLAALASIAYQFQGGEAAKTLLFQSCQLQPPSVQGLFALCVLG
IKQKNIQLIQSALEAMQPYQDHPKYLAEVVGLQALVSMLLQGDSGHQAKG
MICRQVHRNPQSASLWFTLATHLLHTAASNQSAYQSAAKCAQKSVGLSSI
HLPGILEPHEQHKSTPTAASNLVTLALLESGSREAARKAAMRAVHLYPND
MGAWSLLWVAQGKTDKNLGDFLANQAQEHLEVDATPGLGDWLSKLKTLRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR039226Ski3/TTC37
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0055087Ski complex
Vocabulary: Biological Process
TermDefinition
GO:0006401RNA catabolic process
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