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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003392 | Protein patched/dispatched | PFAM | PF02460 | Patched | coord: 669..1207
e-value: 1.3E-60
score: 205.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 332..373 |
| None | No IPR available | PANTHER | PTHR10796 | PATCHED-RELATED | coord: 670..1206 |
| None | No IPR available | PANTHER | PTHR10796:SF182 | SUBFAMILY NOT NAMED | coord: 670..1206 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 821..845 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 801..820 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 1217..1237 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 846..850 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 1..712 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 734..744 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 745..773 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 1186..1191 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 774..778 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 1238..1329 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 1159..1163 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 1139..1158 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 1212..1216 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 851..876 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 779..800 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 1164..1185 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 877..1138 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 713..733 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 1192..1211 |
| None | No IPR available | SUPERFAMILY | 82866 | Multidrug efflux transporter AcrB transmembrane domain | coord: 700..876 |
| None | No IPR available | SUPERFAMILY | 82866 | Multidrug efflux transporter AcrB transmembrane domain | coord: 1100..1216 |
| None | No IPR available | TMHMM | TMhelix | | coord: 822..844 |
| None | No IPR available | TMHMM | TMhelix | | coord: 1217..1239 |
| None | No IPR available | TMHMM | TMhelix | | coord: 851..873 |
| None | No IPR available | TMHMM | TMhelix | | coord: 714..736 |
| None | No IPR available | TMHMM | TMhelix | | coord: 749..771 |
| None | No IPR available | TMHMM | TMhelix | | coord: 1191..1213 |
| None | No IPR available | TMHMM | TMhelix | | coord: 1139..1158 |
| None | No IPR available | TMHMM | TMhelix | | coord: 1162..1184 |
| None | No IPR available | TMHMM | TMhelix | | coord: 924..946 |
| IPR000731 | Sterol-sensing domain | PROSITE | PS50156 | SSD | coord: 716..876
score: 37.695 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk07540 ID=Tk07540|Name=Tk07540|organism=Tigriopus kingsejongensis|type=polypeptide|length=1329bp
MRELMDLWPNSATAAKTGPSFLASFALKLPTVALNLVSYKGINVTLDEAV
EVFTNYHACMHKGDVSLNSVALMDVHKGTAYGLVTAVTPRSDRTTNPKSR
WAILKDKDGFCLCGYHFRWAADATKCADGCQWAKLTVRKIKQGSQSAALP
PWPPSSPPALIQRQALACPTSAPDAANAAIRMVHASTKAVWFADCGEATS
FAPAAAADIAACAEPATDIFVLANGKACTIYGRKLLEGDLGDLGKFTHKF
YIAALRDNILGFDFLDKTRLLVDCHNAALVDASTGTKLVRSLTTGRFICA
IPAAPPPTAPWCFSGLLDDFAAIFAPRRLRSQPGRPQHEVHHQAQARNAL
WQDPHQTPPPLRPKGGRRQGRPFRARLRRPEFLVKDVLPDGLILLLDSRF
GRSHPVVPKPLRSHVFDELHSLAHAGTAVSKKLTGKRFSWPTLDVDVANP
RSAVKGDPGISPAKMVFGSSLVLPNSYVERAHKAGSTQAADFVWELQAVF
ADRSFTPAAHHVSAAKTDFLLSGMATASHVWERFDSVKRPLQRPYKGPFR
VLFRADKFYIINKAAIGIYLIEKNFQELLGGIEYDGISGQIVGAKSVLMN
FVGRMNGTAAREGQLEIDNAVGEWDESLRSSLTALDIVLRLLDRLAACTA
MDTAALALMDLSRPAKKVEVDPATMAFEAQLVGVLNNQEGFTDGLVSYSH
VARSFSDIASGNIFTDVNMVVFGFAIVFIYVLLMLGQFHCVKNRVFVSLA
GLVSVFMALVASYGICGTLGFPFSPLHNFIPFLIMGLGIDDMFVIMQAWT
KFAEHRKDLTKVEKFGETMKRAGVAITVTSITDFIAFGIGASTLLPALKS
FCLFCGVGILITFFLQATWFVAWMSLDQDRIDSGRTLLFTAQKPSSEDEV
SHCLSKVDKNLLQRAFDAYGQSLSQTHTVKIVILSLTTVFLAFSIWNTTQ
LRQEFDPVWFLPKDSYLFQWFQLKCKYYPSQGEHVHVFMTDLDLHGEFHK
IESVALSIANQSDIISHVNSWALEFVRYIKKMDLEPNLIVSDFAQFQERL
TQFLFSSSGSKYRLLFHYDEELLCGKPSPNISMSIFEFTHRLLDGPGQQI
PAMNRIKAIIREANFSGHVFPFSKGYATWETDEVIMEELVRNLLLALFCI
LLTTLMLLSNVMAAIQVLTCVVLTLVNVAGFMHVWGKRLEGAMGVALVVI
FGTGVELVVIFGTGVELVVIFGTGVELVVIFGTGVGLEVSHGREWRPDGP
TDGGLAIRVDSAIRVDSAIRVDSAIRVDSAIRVDSAIRVDSAIRVDSAIR
VDSAIRVAGWFEGMYVSALRECTSSGRGN back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
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