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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR023273 | RNA (C5-cytosine) methyltransferase, NOP2 | PRINTS | PR02012 | RCMTNOP2 | coord: 333..346
score: 84.84
coord: 277..297
score: 48.46
coord: 310..322
score: 54.2 |
| IPR023267 | RNA (C5-cytosine) methyltransferase | PRINTS | PR02008 | RCMTFAMILY | coord: 469..481
score: 73.81
coord: 403..413
score: 67.75
coord: 523..539
score: 66.32
coord: 374..388
score: 30.12 |
| IPR031341 | Ribosomal RNA small subunit methyltransferase F, N-terminal | PFAM | PF17125 | Methyltr_RsmF_N | coord: 301..387
e-value: 2.8E-7
score: 30.8 |
| None | No IPR available | GENE3D | 3.30.70.3130 | | coord: 281..387
e-value: 2.4E-35
score: 122.6 |
| None | No IPR available | GENE3D | 3.40.50.150 | | coord: 391..702
e-value: 4.5E-62
score: 211.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 929..945 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 581..945 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 587..605 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 909..923 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 606..647 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 655..888 |
| None | No IPR available | PANTHER | PTHR22807 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING | coord: 132..573 |
| None | No IPR available | PANTHER | PTHR22807:SF30 | 28S RRNA CYTOSINE 4447 -C 5 -METHYLTRANSFERASE-RELATED | coord: 132..573 |
| IPR011023 | Nop2p | TIGRFAM | TIGR00446 | TIGR00446 | coord: 326..576
e-value: 4.3E-89
score: 296.2 |
| IPR001678 | SAM-dependent methyltransferase RsmB/NOP2-type | PFAM | PF01189 | Methyltr_RsmB-F | coord: 391..558
e-value: 1.6E-64
score: 217.1 |
| IPR001678 | SAM-dependent methyltransferase RsmB/NOP2-type | PROSITE | PS51686 | SAM_MT_RSMB_NOP | coord: 314..588
score: 63.105 |
| IPR018314 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site | PROSITE | PS01153 | NOL1_NOP2_SUN | coord: 468..479 |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase | SUPERFAMILY | 53335 | S-adenosyl-L-methionine-dependent methyltransferases | coord: 286..563 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk07938 ID=Tk07938|Name=Tk07938|organism=Tigriopus kingsejongensis|type=polypeptide|length=945bp
MGRKGNFQERVKSGPGRKSKKQAPPTFAPEILGPTDEKVDNKSLTRRQKL
RVRKREDKKLDGGVQKVANPKKKKTPKIPNSEDDDEDDDMEDEEVGEGGD
VPEGQLPGYTDENQKWLKPVTETLKRKYSALNPTYDSDEEEDDEEEAEDE
EGEDEEDDDLSEDDDDLIPDSFEQSDDDSDEEEDEDAEESDDDDDALLPI
EKAAKKTEKKRLKLQKIVQKDMEEAAEEREAITLPTVQEMEDEASQPPDL
QILQSRMRDVITVLQNFSQLRQADRSREEYLDCLRRDLCQYYNYNDFMME
KFMQIFPVAEIMEVLEANEVQRPVTIRTNSLKTRRRDLAQALINRGVNLD
PVGKWSKVGLVVYSSQVPLGATPEYLAGHYILQGASSLLPVMALAPQENE
RILDMASAPGGKTTHIAALMKNTGLLVANDANKVRSKAVVGNVHRLGITN
TIVIAQDGREIPKMMKGFDRVLLDAPCSGSGVIAKDPDAKAKKDQRDIKV
CSNLQKQMILAAIDALDAKSKSGGYLVYSTCSILPEENENIINYALGKRS
VKLVPTGIDFGVEGFTNYREKMKKKQAQAELIATKDLAQPQKKRIKRDTP
THEDSPANESPHQTGTPPTTPQTVNGVNQSAEASPPQLVTPQPGSAKKNK
RKSLLKATPPTTPKENSGAQSAQPSPAHSGTPQQGGSQKKNKRKNSLSQA
GTPSTPQENGGAHSAQPGTPQQGGSQKKNKRKNSLSQAGTPSNPQENGGD
QSAQPGTPQQGGSQKKNKRKNSLSKPGTPSTPQENGGDQSAQPGTPQQGG
SQKKNKRKNSLSKPGTPSNPQENGGAQSAQPSPAHSGTPQQGGSQKKNKQ
KNSHSKPGTPTTPKPEGGVKSSQASPASSGTPKQGSATKKIYRKSLPKGT
KPKMARSKGAEQSPSTPQAGQTPRKSARVAMRSAKKASPKMKRSN back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008168 | methyltransferase activity |
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity |
| GO:0003723 | RNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006364 | rRNA processing |
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