Tk08819, Tk08819 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk08819
Unique NameTk08819
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1077
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 399..419
NoneNo IPR availableGENE3D1.10.565.10coord: 817..1076
e-value: 1.2E-62
score: 213.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 799..814
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 789..814
NoneNo IPR availablePANTHERPTHR24086:SF25NUCLEAR HORMONE RECEPTOR FTZ-F1 BETAcoord: 561..884
coord: 909..1077
NoneNo IPR availableCDDcd06930NR_LBD_F2coord: 857..1045
e-value: 3.00335E-48
score: 167.017
NoneNo IPR availableCDDcd07167NR_DBD_Lrh-1_likecoord: 633..722
e-value: 5.11474E-60
score: 197.677
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 629..707
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 863..884
score: 28.48
coord: 1034..1051
score: 28.84
coord: 977..992
score: 31.69
coord: 694..704
score: 43.15
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 682..690
score: 54.12
coord: 649..664
score: 57.32
coord: 690..698
score: 53.93
coord: 633..649
score: 54.03
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 630..701
e-value: 3.0E-36
score: 136.4
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 632..699
e-value: 3.9E-27
score: 94.4
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 633..659
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 630..705
score: 19.528
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 862..1046
e-value: 1.0E-23
score: 94.8
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 905..1053
e-value: 2.3E-19
score: 69.7
IPR000536Nuclear hormone receptor, ligand-binding domainPROSITEPS51843NR_LBDcoord: 820..1075
score: 32.71
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 623..723
e-value: 1.2E-33
score: 117.4
IPR016355Nuclear hormone receptor family 5PANTHERPTHR24086FAMILY NOT NAMEDcoord: 561..884
coord: 909..1077
IPR035500Nuclear hormone receptor-like domain superfamilySUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 680..714
coord: 848..883
coord: 910..1074

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1296_size49803-snap-gene-0.14-mRNA-1maker-scaffold1296_size49803-snap-gene-0.14-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk08819 ID=Tk08819|Name=Tk08819|organism=Tigriopus kingsejongensis|type=polypeptide|length=1077bp
LELQTFQTSSHQPYEGDSPRYPPKSPQNAVPRSGLRLESPLNAPYPDCVS
HSVVSQVPKGASSRPPHHRATHISSSTRLKIPAVSFQERSRVDFVEGEEV
ISPAMKEEANSLVESTSQVEQPSSSSTFLPPGTGGTTLAHHEQEHEHQLE
LRGDKERRVVGGAVLVEPSGEKATSGASGSVDDPACIGPRSIGGTREDAS
LFQTKGRILREEEAEEPRSRRTRGEQQLLKKPAESRFAASCSSFNNSSGA
TPHVKTSAEQALFNTHHIHHQVFRQSTDSNSNMTISSECDDERGGEMPME
EDTPTPMNLSPAHRNEAFCQGLKVPSSVSQPTLCAKMRLKKQRLEAAAAA
ILAANGSAVNLVKADANDNQMQTELSAKHTHTIIRNNNSAWIDQNSALHK
LAEAAERKQEEEMMEIEAASAGSSTPRGGADSDTPASGSPRPHLNAIHHR
LHPKLNPHMEFEVSSSGAATPTASPLTNRHVAKSNTTPSPDSAIHSAYYS
PTQSPVQSRHLSGFSSPFSLHTTPSLSRNNSDASQYGGSHSSTSPLSPSQ
YSPTHSPVQTRHPHFPLLPSSPLPVSRHLSLPPAYHHHHTMLDMRRSSPT
ISETNENEEKPLALNASAQASGISRQQLINSPCPVCGDKISGFHYGIFSC
ESCKGFFKRTVQNKKNYVCLRGAQCPITIATRKKCPACRFDKCLKTGMKL
EAIREDRTRGGRSTYQCSYTLPAGICHPPSSGPSSIPLGLPSIPLPMKRE
PFEGELTPIEVSSSTMANLHVSNALCRKVPDRARPHIPVSLPPTHHHAPL
ERTAQDQEDLRTNSKGPRIEVPALLQEIMDVEHLWFSSRPLEARLNASGP
NSELDMVQNLTVMADKRLYKLVKWCKSLPLFKNILVCPYIQDHIPSPPPT
GIHGKSRSFLQIDDQIALLINAWCELLVFSCCYRSIGSPGLIRVSNEKSL
SLEMAKEYGIENCVEKMLNFTDQLRRLKVDYYEYVSMKVIVLLTSDASGL
KEPEHVRDSQEKVVQSLQKYTNLNYPSLPSKFGELLLRIPELQRVCQVGK
EMLCPRQQSQGETPGFNLLMELLRGDH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001723Nuclear_hrmn_rcpt
IPR001628Znf_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
IPR016355NR5_fam
IPR035500NHR_like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003707steroid hormone receptor activity
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
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