Tk09619, Tk09619 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk09619
Unique NameTk09619
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length549
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 247..261
score: 97.1
coord: 261..275
score: 92.32
coord: 302..319
score: 97.46
coord: 324..342
score: 87.3
coord: 358..379
score: 94.86
coord: 278..299
score: 93.58
coord: 342..358
score: 96.93
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 278..380
e-value: 3.7E-75
score: 265.7
coord: 399..544
e-value: 1.2E-4
score: 26.4
IPR000164Histone H3/CENP-APANTHERPTHR11426HISTONE H3coord: 380..438
coord: 245..380
IPR000164Histone H3/CENP-APROSITEPS00322HISTONE_H3_1coord: 259..265
IPR000164Histone H3/CENP-APROSITEPS00959HISTONE_H3_2coord: 311..319
IPR000164Histone H3/CENP-APROSITEPS00322HISTONE_H3_1coord: 380..386
IPR001951Histone H4SMARTSM00417h44coord: 462..536
e-value: 2.9E-29
score: 113.2
IPR001951Histone H4CDDcd00076H4coord: 464..547
e-value: 4.47118E-46
score: 154.196
IPR004823TATA box binding protein associated factor (TAF)SMARTSM00803TAF_clscoord: 474..539
e-value: 0.0086
score: 17.0
IPR035425CENP-T/Histone H4, histone foldPFAMPF15511CENP-T_Ccoord: 486..542
e-value: 5.2E-7
score: 29.6
IPR005135Endonuclease/exonuclease/phosphatasePFAMPF14529Exo_endo_phos_2coord: 148..223
e-value: 3.1E-12
score: 46.3
IPR009072Histone-foldGENE3D1.10.20.10coord: 246..379
e-value: 3.7E-78
score: 262.0
coord: 380..441
e-value: 7.3E-28
score: 99.2
IPR009072Histone-foldGENE3D1.10.20.10coord: 448..549
e-value: 1.4E-58
score: 197.3
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 379..438
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 246..378
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 449..548
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10coord: 44..229
e-value: 3.7E-22
score: 80.7
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 107..228
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 245..376
e-value: 2.7E-52
score: 176.5
coord: 379..438
e-value: 2.0E-14
score: 54.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 380..406
NoneNo IPR availablePANTHERPTHR11426:SF163SUBFAMILY NOT NAMEDcoord: 380..438
coord: 245..380
IPR019809Histone H4, conserved sitePROSITEPS00047HISTONE_H4coord: 461..465

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold328_size205007-snap-gene-0.20-mRNA-1maker-scaffold328_size205007-snap-gene-0.20-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk09619 ID=Tk09619|Name=Tk09619|organism=Tigriopus kingsejongensis|type=polypeptide|length=549bp
MGTSVGKVHIKKRACLEAGPAPTGAETQAMSQALDLIDDPSPKDVEKVTR
ALARALVNASDREAELVREAEVVREADNLVASLSANPWTAVTVVRTPPNL
SNPKISDNDVVAAIWSTKLKSCPRIMVVSVYMDINNANVIPGKLDQEDSN
SHSSIWGPDTNKRGEILEEWILSNGLEVANVGKRPTFQTIRASSCIDVTL
NSPEIAIIDWKVNDFVASDHQMITFEVEGSGQPREGRPLHKANIMARTKQ
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ
KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFE
DTNLCAIHAKRVTIMPKDIQLARRIRGERKAPRKQLATKAARKSAPATGG
VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRLQDRLAFPITGR
GKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEE
TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR001951Histone_H4
IPR004823TAF_TATA-bd
IPR035425CENP-T/H4_C
IPR005135Endo/exonuclease/phosphatase
IPR009072Histone-fold
IPR036691Endo/exonu/phosph_ase_sf
IPR007125Histone_H2A/H2B/H3
IPR019809Histone_H4_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0006334nucleosome assembly
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