Tk09702, Tk09702 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk09702
Unique NameTk09702
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1492
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 375..395
NoneNo IPR availableCOILSCoilCoilcoord: 1450..1470
NoneNo IPR availableGENE3D1.20.120.1280coord: 22..142
e-value: 4.8E-22
score: 80.2
NoneNo IPR availableGENE3D3.30.70.2850coord: 1302..1473
e-value: 8.8E-13
score: 50.4
NoneNo IPR availableGENE3D2.20.25.410coord: 1022..1065
e-value: 1.1E-11
score: 46.1
NoneNo IPR availableGENE3D2.40.40.20coord: 555..619
e-value: 1.2E-76
score: 258.5
coord: 436..478
e-value: 1.2E-76
score: 258.5
NoneNo IPR availableGENE3D3.30.1490.180coord: 479..554
e-value: 1.2E-76
score: 258.5
NoneNo IPR availableGENE3D1.10.274.100coord: 628..814
e-value: 3.4E-58
score: 198.0
NoneNo IPR availableGENE3D1.10.357.120coord: 1124..1221
e-value: 8.9E-9
score: 37.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1429..1477
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1411..1492
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 25..1413
NoneNo IPR availableCDDcd01435RNAP_I_RPA1_Ncoord: 28..1028
e-value: 0.0
score: 1148.08
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 230..715
coord: 747..1116
coord: 1176..1360
coord: 23..144
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 320..652
e-value: 3.8E-120
score: 415.1
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 815..984
e-value: 4.2E-55
score: 188.4
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 446..624
e-value: 2.6E-65
score: 219.6
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 26..386
e-value: 3.8E-26
score: 92.1
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 891..975
e-value: 2.0E-21
score: 75.9
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 627..820
e-value: 9.2E-33
score: 113.3
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 982..1293
e-value: 2.0E-64
score: 217.5
IPR015699DNA-directed RNA pol I, largest subunitPANTHERPTHR19376:SF11DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1coord: 25..1413

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1466_size39939-snap-gene-0.8-mRNA-1maker-scaffold1466_size39939-snap-gene-0.8-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk09702 ID=Tk09702|Name=Tk09702|organism=Tigriopus kingsejongensis|type=polypeptide|length=1492bp
MGSQFRRVRSEMSLGGGETLHDFPESVTFSLYNDDEIKALSACSITSPMS
FNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLP
VCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQ
RATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAV
MTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFI
YEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDA
QVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQT
TGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDA
IWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVN
YAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGP
DIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEVSTKYVYR
HLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFD
GDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVK
MTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIIST
IILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTT
MCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAF
SKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVN
LKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDI
NGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRP
PIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLI
DTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDV
CKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWK
IKHGGKTHRDTGFLRFCLKKGRDHPELATQVSKMGRTKLDDLLLDQWQNL
TTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPV
KFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAG
RGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLN
RITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKI
LSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDI
ADKNMEKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQADDDHEEGLS
EDEEAMVKDLATQLDDFLEERDPDDVKPVSSLMSSRVASPTL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006592RNA_pol_N
IPR038120Rpb1_funnel_sf
IPR000722RNA_pol_asu
IPR007080RNA_pol_Rpb1_1
IPR007083RNA_pol_Rpb1_4
IPR007066RNA_pol_Rpb1_3
IPR007081RNA_pol_Rpb1_5
IPR015699DNA-dir_RNA_pol1_lsu
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
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