Tk09936, Tk09936 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk09936
Unique NameTk09936
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1146
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 902..922
NoneNo IPR availableCOILSCoilCoilcoord: 874..894
NoneNo IPR availableCOILSCoilCoilcoord: 296..316
NoneNo IPR availableCOILSCoilCoilcoord: 343..370
NoneNo IPR availableCOILSCoilCoilcoord: 392..412
NoneNo IPR availableCOILSCoilCoilcoord: 813..840
NoneNo IPR availableGENE3D3.40.50.300coord: 843..1143
e-value: 6.7E-19
score: 70.7
NoneNo IPR availableGENE3D3.40.50.300coord: 104..362
e-value: 3.7E-26
score: 94.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 445..471
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 24..1132
IPR038729Rad50/SbcC-type AAA domainPFAMPF13476AAA_23coord: 107..363
e-value: 2.0E-14
score: 54.5
IPR027132Structural maintenance of chromosomes protein 6PANTHERPTHR19306:SF6STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6coord: 24..1132
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 103..315
coord: 954..1127

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1000_size72005-snap-gene-0.10-mRNA-1maker-scaffold1000_size72005-snap-gene-0.10-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk09936 ID=Tk09936|Name=Tk09936|organism=Tigriopus kingsejongensis|type=polypeptide|length=1146bp
MRDRRTSSLEEDDEDELDEKAARRGVFPMARRSPWAFSRSTTTFSTSQAT
MAAEGLDALPRYCRATMQDGARSHKRLRILGEDESGLNSSARSCLDQTVR
SGVLKEIRLTNFMNHASLHLRLDDGINLLSGRNGSGKSSILQAIVLGLGG
QAKDTKRSTSSRSFVRNDCLKAEIRVRVWNGGSQRYRPEVYGKEINFERL
IYKSSGRSMHVLKDESGKVVHTDKIADDEKKKICEFLSIQLNNPISILQQ
EEAKIFFTNTTGHSLYDFFIRATLLKPLQQMYENAKHDLIVCSETLAEKR
DNVKEAEAHWMEIQEKVTKIKRVDEEIKKTAMDLEKQILWGYVQSKEIKL
KELKNHVQTLSEKKAKEEAIVAESLKSIEVLLEQERESEKVKRMTEAEVK
AITMDYNRAKEEQVEAKGKLDLVVMDLETKSTTLSVLREQERSLANSVRS
KKTMKDRKNAERDRHACEMKRKKDQVKEDIIKINHSIQDKGKLRDSLSTC
LQKLDQDEKDVRAEKLDAQRHQRTLEEDLFNLARSNQSSLKRFGAEFEHL
AQDISESRDFKTPPIGPIGSHIRLVGQASEDKNLADLLETELTKGFLRSF
LVATWADSKALSKIFGRHFRGRKPPSIVIWQFRGKKDDIRRGQVQTHSEM
PGILDYLEIANPEVFNYVVDFKRIETTLVLSQTMAQDLFSEAKNVPRNAA
KAITPDFYRFIPATKGNYASYFMERPRGHLNTLVADTRSNQATLEAELAK
NKADIATADKALKKVQLDKADIASKKDEAVKTITTMNLKLGTLKQDLTEV
NLALTNQSEGDTIPEMETKLKSLRREIQEAESNVQGLKMRKGASVLQERA
AKTILAQQTSKMNEAAQALTDGGLSEIKANIAQKQKEVNRNKTNLGKVVA
EIKSQTAKAVEAERDFENTKRDAKVKTRTEITNVVDRAQLAAHQKELEVR
KRQMAAEFDMTPKEMQEKVSRKKKIYVTLKKQLEAVEVNFHKIEAMQEVR
KNVFVGIRQSLIRSVRTIFIMRMQDHGLLGNLEVSHTRKTLNIKVSHLRG
SQEPKAEDALPLSSLSGGERSKTLVCLMIASWEYMAPPFRCLDEWDVYLD
ERSRSMIEEVLFSYAKSKDFQYILISPQGSTLKGANIVQIGRGDAI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038729Rad50/SbcC_AAA
IPR027132SMC6
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0000724double-strand break repair via homologous recombination
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0030915Smc5-Smc6 complex
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