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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 902..922 |
None | No IPR available | COILS | Coil | Coil | coord: 874..894 |
None | No IPR available | COILS | Coil | Coil | coord: 296..316 |
None | No IPR available | COILS | Coil | Coil | coord: 343..370 |
None | No IPR available | COILS | Coil | Coil | coord: 392..412 |
None | No IPR available | COILS | Coil | Coil | coord: 813..840 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 843..1143 e-value: 6.7E-19 score: 70.7 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 104..362 e-value: 3.7E-26 score: 94.5 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 445..471 |
None | No IPR available | PANTHER | PTHR19306 | STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 | coord: 24..1132 |
IPR038729 | Rad50/SbcC-type AAA domain | PFAM | PF13476 | AAA_23 | coord: 107..363 e-value: 2.0E-14 score: 54.5 |
IPR027132 | Structural maintenance of chromosomes protein 6 | PANTHER | PTHR19306:SF6 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6 | coord: 24..1132 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 103..315 coord: 954..1127 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk09936 ID=Tk09936|Name=Tk09936|organism=Tigriopus kingsejongensis|type=polypeptide|length=1146bp MRDRRTSSLEEDDEDELDEKAARRGVFPMARRSPWAFSRSTTTFSTSQAT MAAEGLDALPRYCRATMQDGARSHKRLRILGEDESGLNSSARSCLDQTVR SGVLKEIRLTNFMNHASLHLRLDDGINLLSGRNGSGKSSILQAIVLGLGG QAKDTKRSTSSRSFVRNDCLKAEIRVRVWNGGSQRYRPEVYGKEINFERL IYKSSGRSMHVLKDESGKVVHTDKIADDEKKKICEFLSIQLNNPISILQQ EEAKIFFTNTTGHSLYDFFIRATLLKPLQQMYENAKHDLIVCSETLAEKR DNVKEAEAHWMEIQEKVTKIKRVDEEIKKTAMDLEKQILWGYVQSKEIKL KELKNHVQTLSEKKAKEEAIVAESLKSIEVLLEQERESEKVKRMTEAEVK AITMDYNRAKEEQVEAKGKLDLVVMDLETKSTTLSVLREQERSLANSVRS KKTMKDRKNAERDRHACEMKRKKDQVKEDIIKINHSIQDKGKLRDSLSTC LQKLDQDEKDVRAEKLDAQRHQRTLEEDLFNLARSNQSSLKRFGAEFEHL AQDISESRDFKTPPIGPIGSHIRLVGQASEDKNLADLLETELTKGFLRSF LVATWADSKALSKIFGRHFRGRKPPSIVIWQFRGKKDDIRRGQVQTHSEM PGILDYLEIANPEVFNYVVDFKRIETTLVLSQTMAQDLFSEAKNVPRNAA KAITPDFYRFIPATKGNYASYFMERPRGHLNTLVADTRSNQATLEAELAK NKADIATADKALKKVQLDKADIASKKDEAVKTITTMNLKLGTLKQDLTEV NLALTNQSEGDTIPEMETKLKSLRREIQEAESNVQGLKMRKGASVLQERA AKTILAQQTSKMNEAAQALTDGGLSEIKANIAQKQKEVNRNKTNLGKVVA EIKSQTAKAVEAERDFENTKRDAKVKTRTEITNVVDRAQLAAHQKELEVR KRQMAAEFDMTPKEMQEKVSRKKKIYVTLKKQLEAVEVNFHKIEAMQEVR KNVFVGIRQSLIRSVRTIFIMRMQDHGLLGNLEVSHTRKTLNIKVSHLRG SQEPKAEDALPLSSLSGGERSKTLVCLMIASWEYMAPPFRCLDEWDVYLD ERSRSMIEEVLFSYAKSKDFQYILISPQGSTLKGANIVQIGRGDAI back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term | Definition |
GO:0000724 | double-strand break repair via homologous recombination |
GO:0006281 | DNA repair |
Vocabulary: Cellular Component
Term | Definition |
GO:0030915 | Smc5-Smc6 complex |
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