Tk09946, Tk09946 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk09946
Unique NameTk09946
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length367
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 75..91
score: 25.5
coord: 162..176
score: 43.8
coord: 116..127
score: 35.86
coord: 236..248
score: 28.79
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 23..335
IPR006028Gamma-aminobutyric acid A receptor/Glycine receptor alphaPRINTSPR00253GABAARECEPTRcoord: 305..326
score: 39.18
coord: 271..292
score: 41.91
coord: 344..364
score: 42.01
coord: 245..265
score: 39.49
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 249..335
e-value: 3.9E-18
score: 66.3
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainPFAMPF02931Neur_chan_LBDcoord: 33..241
e-value: 2.7E-30
score: 105.3
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilyGENE3D2.70.170.10coord: 20..239
e-value: 5.4E-43
score: 148.7
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilySUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 28..241
NoneNo IPR availableGENE3D1.20.58.390coord: 240..367
e-value: 2.8E-43
score: 149.2
NoneNo IPR availablePANTHERPTHR18945:SF538RH55021Pcoord: 23..335
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 293..306
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 332..342
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 307..331
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 269..274
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 362..367
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 275..292
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 250..268
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..249
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 343..361
NoneNo IPR availableTMHMMTMhelixcoord: 273..292
NoneNo IPR availableTMHMMTMhelixcoord: 244..266
NoneNo IPR availableTMHMMTMhelixcoord: 342..364
NoneNo IPR availableTMHMMTMhelixcoord: 307..329
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 162..176
IPR036719Neurotransmitter-gated ion-channel transmembrane domain superfamilySUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 242..365

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold981_size73921-snap-gene-0.16-mRNA-1maker-scaffold981_size73921-snap-gene-0.16-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk09946 ID=Tk09946|Name=Tk09946|organism=Tigriopus kingsejongensis|type=polypeptide|length=367bp
MERLIGGLILCYCGQLSEGKHPIDDEQLHKHLDIASDYSLHHAPMVANGQ
KPLPVEFSINLRNVLDVNEKEQLISLETSLRMFWKDPRVKVREASLNLSA
PVLEQYVTFNPSVAHHFWIPDIFLDRAKTIRVPTYFTRPASLRIYRDSTF
RYSSRINFDAACPMDFHRYPVDSQLCEINFESFGHTNKQLAFSWKANSSN
INPNISLAQFVMRVVLEETYATDYYDLAYPGIIMKIHLTREIGYHVVQTY
IPSVVFVILAWLSLFISADSVPGRVGMGMTTLLTLTAMFGSVRQNVPRVS
YVSYLDIWMLMCILFVFFCMLEFTVVTTLMRKNQRFTAERLEHVSRIAVP
IIFALFNIAYWPNLFAT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006028GABAA/Glycine_rcpt
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR036734Neur_chan_lig-bd_sf
IPR018000Neurotransmitter_ion_chnl_CS
IPR036719Neuro-gated_channel_TM_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004888transmembrane signaling receptor activity
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0034220ion transmembrane transport
GO:0006811ion transport
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