Tk09963, Tk09963 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk09963
Unique NameTk09963
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length357
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 327..357
NoneNo IPR availableGENE3D3.30.890.10coord: 59..137
e-value: 5.1E-15
score: 57.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..241
NoneNo IPR availablePANTHERPTHR12396:SF5METHYL-CPG-BINDING DOMAIN PROTEIN 2coord: 61..138
coord: 192..354
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 61..138
coord: 192..354
IPR032343Methyl-CpG-binding domain protein 2/3, p55-binding regionPFAMPF16564MBDacoord: 186..256
e-value: 4.4E-15
score: 55.5
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 68..134
e-value: 5.4E-9
score: 35.5
IPR001739Methyl-CpG DNA bindingPROSITEPS50982MBDcoord: 58..136
score: 14.251
IPR025884Methyl-CpG binding protein 2/3, C-terminal domainPFAMPF14048MBD_Ccoord: 260..352
e-value: 1.3E-23
score: 83.4
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 66..136

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold17_size721972-snap-gene-2.9-mRNA-1maker-scaffold17_size721972-snap-gene-2.9-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk09963 ID=Tk09963|Name=Tk09963|organism=Tigriopus kingsejongensis|type=polypeptide|length=357bp
RRQRFVFCAEQNNQHPRRPSLLLAVFACGLEPCGGSGVSSARMAMDFSAS
VLSAVAAAGYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDV
VYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKINPLLLRTSAKPGPS
VSGSAGRKSSKPVSTSAGLAAAAAAANGTNAATALARDAALVPPIRQTAS
IFKQPVTVFKISAELPKVDENEDGKTASKQRTESKSSNVEKPRQLFWEKR
LSGMAASYPDEEFEPFKLPPNFAPVGPGVTDDIVLASISTSLHMGGGAIN
GQKDSKHMKENDPSAFCNPEQPLIGTTKISQQDIEKQEDQVNETRRKLAE
AIAALTG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032343MBD2/MBD3_p55-bd
IPR001739Methyl_CpG_DNA-bd
IPR025884MeCpG-bd_2/3_C_dom
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
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