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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000795 | Transcription factor, GTP-binding domain | PRINTS | PR00315 | ELONGATNFCT | coord: 179..187 score: 52.84 coord: 256..265 score: 45.49 coord: 204..214 score: 48.26 coord: 134..147 score: 42.18 |
IPR000795 | Transcription factor, GTP-binding domain | PFAM | PF00009 | GTP_EFTU | coord: 132..323 e-value: 1.5E-43 score: 148.5 |
IPR000795 | Transcription factor, GTP-binding domain | PROSITE | PS51722 | G_TR_2 | coord: 130..414 score: 39.254 |
IPR000640 | Elongation factor EFG, domain V-like | SMART | SM00838 | EFG_C_a | coord: 832..921 e-value: 1.6E-17 score: 74.2 |
IPR000640 | Elongation factor EFG, domain V-like | PFAM | PF00679 | EFG_C | coord: 832..920 e-value: 6.9E-23 score: 80.4 |
IPR005517 | Translation elongation factor EFG/EF2, domain IV | SMART | SM00889 | EFG_IV_2 | coord: 709..830 e-value: 7.9E-18 score: 75.2 |
IPR005517 | Translation elongation factor EFG/EF2, domain IV | PFAM | PF03764 | EFG_IV | coord: 713..829 e-value: 6.3E-24 score: 84.0 |
IPR014721 | Ribosomal protein S5 domain 2-type fold, subgroup | GENE3D | 3.30.230.10 | | coord: 675..830 e-value: 1.5E-114 score: 383.6 |
IPR005225 | Small GTP-binding protein domain | TIGRFAM | TIGR00231 | TIGR00231 | coord: 133..265 e-value: 8.3E-13 score: 46.4 |
None | No IPR available | PFAM | PF14492 | EFG_II | coord: 591..654 e-value: 5.4E-7 score: 29.5 |
None | No IPR available | GENE3D | 2.40.30.10 | | coord: 446..572 e-value: 4.4E-166 score: 554.9 coord: 165..171 e-value: 4.4E-166 score: 554.9 |
None | No IPR available | GENE3D | 3.30.70.240 | | coord: 831..930 e-value: 1.5E-114 score: 383.6 coord: 670..674 e-value: 1.5E-114 score: 383.6 |
None | No IPR available | GENE3D | 3.30.70.870 | | coord: 590..667 e-value: 3.0E-29 score: 102.8 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 172..323 e-value: 4.4E-166 score: 554.9 coord: 126..164 e-value: 4.4E-166 score: 554.9 coord: 430..445 e-value: 4.4E-166 score: 554.9 |
None | No IPR available | GENE3D | 3.90.1430.10 | | coord: 324..429 e-value: 4.4E-166 score: 554.9 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..56 |
None | No IPR available | PANTHER | PTHR42908 | FAMILY NOT NAMED | coord: 49..921 |
None | No IPR available | PANTHER | PTHR42908:SF6 | 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT | coord: 49..921 |
None | No IPR available | CDD | cd16264 | snRNP_III | coord: 592..663 e-value: 9.31708E-40 score: 138.785 |
None | No IPR available | CDD | cd04167 | Snu114p | coord: 133..332 e-value: 1.97876E-105 score: 324.221 |
None | No IPR available | CDD | cd01683 | EF2_IV_snRNP | coord: 663..840 e-value: 1.07212E-120 score: 362.762 |
None | No IPR available | CDD | cd04090 | EF2_II_snRNP | coord: 479..572 e-value: 1.39467E-48 score: 164.717 |
IPR004161 | Translation elongation factor EFTu-like, domain 2 | PFAM | PF03144 | GTP_EFTU_D2 | coord: 496..571 e-value: 7.6E-14 score: 51.8 |
IPR031950 | 116kDa U5 small nuclear ribonucleoprotein component, N-terminal | PFAM | PF16004 | EFTUD2 | coord: 4..113 e-value: 4.4E-37 score: 127.3 |
IPR035655 | 116kDa U5 small nuclear ribonucleoprotein component, C-terminal | CDD | cd04098 | eEF2_C_snRNP | coord: 835..914 e-value: 1.69724E-50 score: 169.734 |
IPR009000 | Translation protein, beta-barrel domain superfamily | SUPERFAMILY | 50447 | Translation proteins | coord: 445..574 |
IPR035647 | EF-G domain III/V-like | SUPERFAMILY | 54980 | EF-G C-terminal domain-like | coord: 590..664 |
IPR035647 | EF-G domain III/V-like | SUPERFAMILY | 54980 | EF-G C-terminal domain-like | coord: 835..922 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 117..444 |
IPR020568 | Ribosomal protein S5 domain 2-type fold | SUPERFAMILY | 54211 | Ribosomal protein S5 domain 2-like | coord: 666..834 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk10253 ID=Tk10253|Name=Tk10253|organism=Tigriopus kingsejongensis|type=polypeptide|length=960bp MDPDYYDEFGNYIGPDLESEESSEDEAEAGALGEAGGSEVVAGEDQLEDE DEAGVSSTAVVLHEDKKYYPTAMEVFGPEVETLVQEEDAQPLTEPIIAPV KRNKFQHVEQELPETSYDAEFLADLMDNPHLVRNVSLVGHLHHGKSSFVD CLMQETHPDLRTKEDKPLRYTDTLFTEQERGVTIKSMPVTLVLQDLRSKS FLINLFDTPGHVNFSDETTASMRLSDGVVVFVDAAEGVMLNTERLVKHAI QEKLAITVCINKIDKLVLELKLPPIDAYFKLRHIVDEINGLLSLYSEEEN PQKVSPILGNVCFASSQFGFCLTLRSFAQLYSETYGGSIDVSAFAKRLWG DMFFNPKTRKFAKKSPHASAQRSFVEFILEPLYKIFAQVVGDVDTCLPSL CEELGIRLTKEESKMNIRPLLKLICTRFFGDFNGFVEMLAHHVPSPAENA KNKVQHIYTGNLDTVRAEDMINCDQDGRLMVHTTKQYPNDDLTCFHVFGR IMSGTLHSGQEIRLLGENYTIYDEEDSRNMTVGRLWIYEGRYKIEVNRVP AGNWVLIEGIDQPIVKTSTITDLKGGDEDLYIFRPLKFNTQSVIKIAVEP VNPSELPKMLEGLRKVNKSYPLLNTKVEESGEHVVLGTGELYLDCVMHDL RKLYSEIDIKVADPVVSFCETVVETSSLKCFAETPNKKNKITMIAEPLEK GLAEDIENEVVAINWNKKRLGEFFQTKYDWDLLAARSIWAFGPDATGPNI LVDDTLSSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNGKFKILDA VIASEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPYMFVEVQAPADCVS AVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQ AFCLSVFHHWQIVPGDPLDNTCPRRTQVREVVPHVDGVLDEAVLPTPQDM GDQARRARPR back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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