Tk10253, Tk10253 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk10253
Unique NameTk10253
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length960
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000795Transcription factor, GTP-binding domainPRINTSPR00315ELONGATNFCTcoord: 179..187
score: 52.84
coord: 256..265
score: 45.49
coord: 204..214
score: 48.26
coord: 134..147
score: 42.18
IPR000795Transcription factor, GTP-binding domainPFAMPF00009GTP_EFTUcoord: 132..323
e-value: 1.5E-43
score: 148.5
IPR000795Transcription factor, GTP-binding domainPROSITEPS51722G_TR_2coord: 130..414
score: 39.254
IPR000640Elongation factor EFG, domain V-likeSMARTSM00838EFG_C_acoord: 832..921
e-value: 1.6E-17
score: 74.2
IPR000640Elongation factor EFG, domain V-likePFAMPF00679EFG_Ccoord: 832..920
e-value: 6.9E-23
score: 80.4
IPR005517Translation elongation factor EFG/EF2, domain IVSMARTSM00889EFG_IV_2coord: 709..830
e-value: 7.9E-18
score: 75.2
IPR005517Translation elongation factor EFG/EF2, domain IVPFAMPF03764EFG_IVcoord: 713..829
e-value: 6.3E-24
score: 84.0
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 675..830
e-value: 1.5E-114
score: 383.6
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 133..265
e-value: 8.3E-13
score: 46.4
NoneNo IPR availablePFAMPF14492EFG_IIcoord: 591..654
e-value: 5.4E-7
score: 29.5
NoneNo IPR availableGENE3D2.40.30.10coord: 446..572
e-value: 4.4E-166
score: 554.9
coord: 165..171
e-value: 4.4E-166
score: 554.9
NoneNo IPR availableGENE3D3.30.70.240coord: 831..930
e-value: 1.5E-114
score: 383.6
coord: 670..674
e-value: 1.5E-114
score: 383.6
NoneNo IPR availableGENE3D3.30.70.870coord: 590..667
e-value: 3.0E-29
score: 102.8
NoneNo IPR availableGENE3D3.40.50.300coord: 172..323
e-value: 4.4E-166
score: 554.9
coord: 126..164
e-value: 4.4E-166
score: 554.9
coord: 430..445
e-value: 4.4E-166
score: 554.9
NoneNo IPR availableGENE3D3.90.1430.10coord: 324..429
e-value: 4.4E-166
score: 554.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availablePANTHERPTHR42908FAMILY NOT NAMEDcoord: 49..921
NoneNo IPR availablePANTHERPTHR42908:SF6116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENTcoord: 49..921
NoneNo IPR availableCDDcd16264snRNP_IIIcoord: 592..663
e-value: 9.31708E-40
score: 138.785
NoneNo IPR availableCDDcd04167Snu114pcoord: 133..332
e-value: 1.97876E-105
score: 324.221
NoneNo IPR availableCDDcd01683EF2_IV_snRNPcoord: 663..840
e-value: 1.07212E-120
score: 362.762
NoneNo IPR availableCDDcd04090EF2_II_snRNPcoord: 479..572
e-value: 1.39467E-48
score: 164.717
IPR004161Translation elongation factor EFTu-like, domain 2PFAMPF03144GTP_EFTU_D2coord: 496..571
e-value: 7.6E-14
score: 51.8
IPR031950116kDa U5 small nuclear ribonucleoprotein component, N-terminalPFAMPF16004EFTUD2coord: 4..113
e-value: 4.4E-37
score: 127.3
IPR035655116kDa U5 small nuclear ribonucleoprotein component, C-terminalCDDcd04098eEF2_C_snRNPcoord: 835..914
e-value: 1.69724E-50
score: 169.734
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 445..574
IPR035647EF-G domain III/V-likeSUPERFAMILY54980EF-G C-terminal domain-likecoord: 590..664
IPR035647EF-G domain III/V-likeSUPERFAMILY54980EF-G C-terminal domain-likecoord: 835..922
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 117..444
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 666..834

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold178_size283195-snap-gene-0.10-mRNA-1maker-scaffold178_size283195-snap-gene-0.10-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk10253 ID=Tk10253|Name=Tk10253|organism=Tigriopus kingsejongensis|type=polypeptide|length=960bp
MDPDYYDEFGNYIGPDLESEESSEDEAEAGALGEAGGSEVVAGEDQLEDE
DEAGVSSTAVVLHEDKKYYPTAMEVFGPEVETLVQEEDAQPLTEPIIAPV
KRNKFQHVEQELPETSYDAEFLADLMDNPHLVRNVSLVGHLHHGKSSFVD
CLMQETHPDLRTKEDKPLRYTDTLFTEQERGVTIKSMPVTLVLQDLRSKS
FLINLFDTPGHVNFSDETTASMRLSDGVVVFVDAAEGVMLNTERLVKHAI
QEKLAITVCINKIDKLVLELKLPPIDAYFKLRHIVDEINGLLSLYSEEEN
PQKVSPILGNVCFASSQFGFCLTLRSFAQLYSETYGGSIDVSAFAKRLWG
DMFFNPKTRKFAKKSPHASAQRSFVEFILEPLYKIFAQVVGDVDTCLPSL
CEELGIRLTKEESKMNIRPLLKLICTRFFGDFNGFVEMLAHHVPSPAENA
KNKVQHIYTGNLDTVRAEDMINCDQDGRLMVHTTKQYPNDDLTCFHVFGR
IMSGTLHSGQEIRLLGENYTIYDEEDSRNMTVGRLWIYEGRYKIEVNRVP
AGNWVLIEGIDQPIVKTSTITDLKGGDEDLYIFRPLKFNTQSVIKIAVEP
VNPSELPKMLEGLRKVNKSYPLLNTKVEESGEHVVLGTGELYLDCVMHDL
RKLYSEIDIKVADPVVSFCETVVETSSLKCFAETPNKKNKITMIAEPLEK
GLAEDIENEVVAINWNKKRLGEFFQTKYDWDLLAARSIWAFGPDATGPNI
LVDDTLSSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNGKFKILDA
VIASEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPYMFVEVQAPADCVS
AVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQ
AFCLSVFHHWQIVPGDPLDNTCPRRTQVREVVPHVDGVLDEAVLPTPQDM
GDQARRARPR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000795TF_GTP-bd_dom
IPR000640EFG_V-like
IPR005517Transl_elong_EFG/EF2_IV
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR005225Small_GTP-bd_dom
IPR004161EFTu-like_2
IPR031950EFTUD2_N
IPR035655U5-116kDa_C
IPR009000Transl_B-barrel_sf
IPR035647EFG_III/V
IPR027417P-loop_NTPase
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
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