Tk10558, Tk10558 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk10558
Unique NameTk10558
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length153
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 49..57
score: 57.99
coord: 16..31
score: 57.2
coord: 57..65
score: 57.94
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 1..68
e-value: 3.5E-36
score: 136.2
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 2..67
e-value: 1.3E-30
score: 105.5
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 1..72
score: 19.56
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 1..92
e-value: 2.3E-33
score: 116.4
NoneNo IPR availableGENE3D1.10.565.10coord: 93..153
e-value: 1.2E-7
score: 33.3
NoneNo IPR availablePANTHERPTHR24084FAMILY NOT NAMEDcoord: 1..89
NoneNo IPR availablePANTHERPTHR24084:SF24ESTROGEN-RELATED RECEPTOR SPLICE VARIANTcoord: 1..89
NoneNo IPR availablePANTHERPTHR24084:SF24ESTROGEN-RELATED RECEPTOR SPLICE VARIANTcoord: 102..153
NoneNo IPR availablePANTHERPTHR24084FAMILY NOT NAMEDcoord: 102..153
NoneNo IPR availableCDDcd07170NR_DBD_ERRcoord: 1..88
e-value: 1.29643E-58
score: 175.048
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 1..83
IPR035500Nuclear hormone receptor-like domain superfamilySUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 71..153

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold421_size176100-snap-gene-0.27-mRNA-1maker-scaffold421_size176100-snap-gene-0.27-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk10558 ID=Tk10558|Name=Tk10558|organism=Tigriopus kingsejongensis|type=polypeptide|length=153bp
LVCGDVASGFHYGVSSCEACKAFFKRTIQGNIEYTCPASNECEINKRRRK
ACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRRMIESPYGGLHPARKLS
LEENKLLIALTRCEPEPLLALPDPNLPDDQYKTLTTLSEFFDRELVGTIG
WAK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR013088Znf_NHR/GATA
IPR035500NHR_like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
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