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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002059 | Cold-shock protein, DNA-binding | PRINTS | PR00050 | COLDSHOCK | coord: 88..97
score: 75.96
coord: 67..82
score: 72.33
coord: 107..125
score: 54.46 |
| IPR002059 | Cold-shock protein, DNA-binding | PFAM | PF00313 | CSD | coord: 66..133
e-value: 1.4E-24
score: 85.6 |
| IPR002059 | Cold-shock protein, DNA-binding | CDD | cd04458 | CSP_CDS | coord: 65..133
e-value: 1.1045E-21
score: 84.5526 |
| IPR011129 | Cold shock domain | SMART | SM00357 | csp_8 | coord: 66..134
e-value: 7.2E-21
score: 85.3 |
| None | No IPR available | GENE3D | 2.40.50.140 | | coord: 58..145
e-value: 9.2E-28
score: 98.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 193..229 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 126..319 |
| None | No IPR available | PANTHER | PTHR11544:SF14 | Y-BOX-BINDING PROTEIN 3 | coord: 28..175 |
| None | No IPR available | PANTHER | PTHR11544 | COLD SHOCK DOMAIN CONTAINING PROTEINS | coord: 28..175 |
| IPR019844 | Cold-shock conserved site | PROSITE | PS00352 | COLD_SHOCK | coord: 78..97 |
| IPR012340 | Nucleic acid-binding, OB-fold | SUPERFAMILY | 50249 | Nucleic acid-binding proteins | coord: 62..132 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk10648 ID=Tk10648|Name=Tk10648|organism=Tigriopus kingsejongensis|type=polypeptide|length=319bp
MSDTTVVETTPATGSLNNNNAVTSATTSSNPASPPNGTVAVDEHGDEEAP
LMKEEPPKELVATKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAILKN
NPKKAVRSVGDGEVVEFDVVVGEKGNEASNVSGPEGAPVKGSPYAADRKR
GGFRRRGGPPGRGGGGGFFRGGRGGGLGGHGDGDEEAELDLEDDGGFGRR
GGSRGGRFPDRYVRRRGKSLSKEDGEEGDALSDGNSTGGRGGRGSRGRAP
FRGGGGFRGRGRGAPFRGNGGDSFRGSKPRGRGVPNFRGRGLPRGTGRGL
GRGSPRGTRGGSNPPSGSE back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
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| GO:0006355 | regulation of transcription, DNA-templated |
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