Tk10843, Tk10843 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk10843
Unique NameTk10843
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length65
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..65
e-value: 3.3E-10
score: 49.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..65
e-value: 4.1E-15
score: 55.1
IPR016487Sm-like protein Lsm6/SmFPIRSFPIRSF006609snRNP_SmFcoord: 1..65
e-value: 2.4E-28
score: 92.7
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..65
NoneNo IPR availableGENE3D2.30.30.100coord: 2..65
e-value: 2.3E-22
score: 80.3
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Fcoord: 1..65
IPR034100Small nuclear ribonucleoprotein FCDDcd01722Sm_Fcoord: 7..65
e-value: 4.47941E-40
score: 123.476
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..65

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
snap_masked-scaffold3458_size8557-processed-gene-0.1-mRNA-1snap_masked-scaffold3458_size8557-processed-gene-0.1-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk10843 ID=Tk10843|Name=Tk10843|organism=Tigriopus kingsejongensis|type=polypeptide|length=65bp
MATMPMNPKPFLNSLTGKPVMVKLKWGHEYKGFLVSTDGYMNLQLASTEE
FIDGSCTGNLGEVLV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR034100Sm_F
IPR010920LSM_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005732small nucleolar ribonucleoprotein complex
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000387spliceosomal snRNP assembly
Add to Basket