Tk10978, Tk10978 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk10978
Unique NameTk10978
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length844
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 571..652
e-value: 1.0E-9
score: 48.3
coord: 705..786
e-value: 0.022
score: 21.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 572..645
e-value: 6.0E-5
score: 22.7
coord: 729..782
e-value: 4.4E-5
score: 23.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 570..656
score: 10.156
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 704..790
score: 9.593
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 703..789
e-value: 3.2E-20
score: 73.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 526..667
e-value: 4.2E-17
score: 64.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 808..844
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 808..825
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 826..844
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 149..844
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..130
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 131..148
NoneNo IPR availableCDDcd12282RRM2_TatSF1_likecoord: 703..794
e-value: 9.97525E-41
score: 141.976
IPR034393TatSF1-likePANTHERPTHR15608SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2coord: 521..812
IPR034392TatSF1-like, RNA recognition motif 1CDDcd12281RRM1_TatSF1_likecoord: 570..660
e-value: 6.83606E-40
score: 139.976
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 701..784
coord: 570..666

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
snap_masked-scaffold270_size230592-processed-gene-1.17-mRNA-1snap_masked-scaffold270_size230592-processed-gene-1.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk10978 ID=Tk10978|Name=Tk10978|organism=Tigriopus kingsejongensis|type=polypeptide|length=844bp
MPLDDSKLDQLLSSVVSLIQGQANSVKAEKEAREAHVLLMEKQFRLAEEN
QRATQASFDSILTQAQTALDAKEAQIIEHKLLRQDQSEAIVAAAAHAAAT
ASGTRSKSSASPTFPVLMGSEELSVSPKCKYILLLALCLTLVVAFNALPP
PCPTQTTMDSFQVQKLSPEVTQYTSRLTYAQALEHLESSLPFREALFAIL
AQSGLEAYFFETPGVNRTQLPLTPFEFVLVNAPSLVGARPDSQAFEHHFA
KCSQDEAAVVAFANLGRDAQLVAPCPLKDDQASQSCFAHLATFMGHGNQI
QIHALWRRVAQEMRARVEEQDSRQVWLSTSGLGISWLHGKTIGAVKLHLE
KLADKFADFANLNGLVLNASKTEIMIGGKVLEKDLANITIAVDGGNVKPS
KQAQHLPRGQYLRQMAEGLLGGKLGYAMATVIRPRIDDDSPISTHVKAKQ
VALNAVARTITGTRKVGHINLVDLLTNAGMTSINHRATMATAMEMWKAYT
SNDGPSGTCNTFGRLVFPTSRQAEPTRPEPQKEVVEQEKKPEPQNLEEGE
EAPSQSKKPKWFEEDAAKTTKVYVSGLPAEVTEDTFVAFMSKCGMIEIDV
RSNKPKARLYMDKASGTPKGDGLCTYVKQESVQLALQILDGSKWAESEVR
VERAKFEMKGEKYDARLKPKKLKKKELELLKKKHEKYLAWEVDRLRGERS
KKEKVIVVKNLFDPEEFDEDASRILEYSQKLREQCAKFGTVKKVTVHDKH
PEGVAQVWFETAEEADMAISMVHGRLFFNQKVMKAETWDGKTKYKVKESE
EEERERLAKWEKSSLTGKESRTDEFLVSHCSQPSSKPHLYRSPE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034393TatSF1-like
IPR034392TatSF1-like_RRM1
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
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