Tk10980, Tk10980 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk10980
Unique NameTk10980
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length935
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002289Gamma-aminobutyric-acid A receptor, beta subunitPRINTSPR01160GABAARBETAcoord: 345..357
score: 72.47
coord: 139..153
score: 34.74
coord: 585..599
score: 48.42
coord: 245..258
score: 46.24
IPR006028Gamma-aminobutyric acid A receptor/Glycine receptor alphaPRINTSPR00253GABAARECEPTRcoord: 291..311
score: 62.92
coord: 351..372
score: 49.96
coord: 597..617
score: 54.4
coord: 317..338
score: 60.7
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 206..220
score: 54.75
coord: 160..171
score: 51.77
coord: 126..142
score: 39.95
coord: 282..294
score: 32.23
IPR006201Neurotransmitter-gated ion-channelTIGRFAMTIGR00860TIGR00860coord: 67..405
e-value: 1.4E-116
score: 387.9
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 89..232
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 226..407
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilyGENE3D2.70.170.10coord: 69..285
e-value: 6.5E-76
score: 256.2
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilySUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 81..287
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 295..614
e-value: 7.0E-44
score: 150.6
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainPFAMPF02931Neur_chan_LBDcoord: 82..278
e-value: 3.5E-49
score: 167.1
NoneNo IPR availableGENE3D1.20.58.390coord: 650..765
e-value: 7.1E-6
score: 27.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 674..707
NoneNo IPR availablePANTHERPTHR18945:SF611IONOTROPIC GABA RECEPTOR SUBUNIT UNC-49B.3coord: 89..232
NoneNo IPR availablePANTHERPTHR18945:SF611IONOTROPIC GABA RECEPTOR SUBUNIT UNC-49B.3coord: 226..407
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 377..599
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 343..353
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 288..312
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..287
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 600..620
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 321..342
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 313..320
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 621..935
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 354..376
NoneNo IPR availableTMHMMTMhelixcoord: 290..312
NoneNo IPR availableTMHMMTMhelixcoord: 321..343
NoneNo IPR availableTMHMMTMhelixcoord: 353..375
NoneNo IPR availableTMHMMTMhelixcoord: 600..617
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 206..220
IPR036719Neurotransmitter-gated ion-channel transmembrane domain superfamilySUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 669..758
IPR036719Neurotransmitter-gated ion-channel transmembrane domain superfamilySUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 288..407
coord: 558..626

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1004_size71882-snap-gene-0.10-mRNA-1maker-scaffold1004_size71882-snap-gene-0.10-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk10980 ID=Tk10980|Name=Tk10980|organism=Tigriopus kingsejongensis|type=polypeptide|length=935bp
MGWVFIIYGGTQSDSFLTHPKAGRRFNLLPFFAISKYEPTHNPHRYESSR
AEKRLQIPHCSSAPWETYQYQQSNFADVNISALLDSFQKGYDKRVRPNYG
GTPVTVGVTMYVLSISSISEVMMDFTLDMYFRQFWQDPRLSFESRPGLQK
LVVGAEYINQIWVPDTFFVNEKTAYFHKATTENQFLRILHTGEILRSIRL
TITASCPMDLQYFPMDRQLCYIEIESFGYTMSDIRYKWNDGLTSVQISGD
VSLPQFKVLGHRQKTIEASLSTGNYSRLACEIQFVRSMGYYLIQIYIPSS
LIVIISWVSFWLNRGATPARVGLGVTTVLTMTTLMASTNAALPKISYVKS
IDVYLGFCFFMVFASLLEYASVGYMAKRIQMRKNRFLALQKMAEQKKNEA
MNANSGPLSDGGPPDHHGIPKQTEIRLNMHDMTKSASSSVRLNKSGIPSG
SQHQISPMSSTHHHHHSRAQTPPSPSGQAGGGGSMRYYQPQQYQSLRRPS
DQQRQEYFHHQRSQSVHNSPYLPTHVRHSQMHAEPPHRGEERHHHHHHNP
GGSGQPGLSGRLLPHHMPHHASAAQQLECKKNLQKMLGISPSDIDKYSRI
FFPISFISFNLMYWIIYLHVSDEIADDLTVHFKVHDPKMHCKGGSRENTI
SRYHHENKYSMHHRGIPPGMRHYDEEAPPLPPPSQHHYGRAPLAPGGMPP
PPPPVPPMVPPNPDCDMKELNKMFGMSASDIDKYSRVLFPVTFICFQLMY
WIIYQHLSDDVVEELLRYGLPVFGQVRLQDTDPTHGNMKKLQGVLNDLMR
LVANKRISDKISCVDLSEMTGIPSLNRICASATLKELKRASDLGWPLADV
LEHAKTFLLYAPGEMYTCHDPDDVFWYAMGDIVWTRQGTQLGACRAFEDL
HEPRSLANIVDRVAEVDPSLVGTIRENSSIHRYRC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002289GABAAb_rcpt
IPR006028GABAA/Glycine_rcpt
IPR006201Neur_channel
IPR036734Neur_chan_lig-bd_sf
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
IPR036719Neuro-gated_channel_TM_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0004890GABA-A receptor activity
GO:0004888transmembrane signaling receptor activity
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
GO:0034220ion transmembrane transport
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