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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR022712 | Beta-Casp domain | SMART | SM01027 | Beta_Casp_2 | coord: 266..391 e-value: 6.5E-25 score: 98.8 |
IPR022712 | Beta-Casp domain | PFAM | PF10996 | Beta-Casp | coord: 266..391 e-value: 5.9E-20 score: 71.4 |
IPR025069 | Cleavage and polyadenylation specificity factor 2, C-terminal | PFAM | PF13299 | CPSF100_C | coord: 638..778 e-value: 8.9E-29 score: 100.7 |
IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain | PFAM | PF07521 | RMMBL | coord: 549..621 e-value: 3.7E-13 score: 49.1 |
IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | GENE3D | 3.60.15.10 | | coord: 546..631 e-value: 3.4E-5 score: 25.2 |
IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | GENE3D | 3.60.15.10 | | coord: 33..280 e-value: 3.2E-76 score: 257.8 |
IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | SUPERFAMILY | 56281 | Metallo-hydrolase/oxidoreductase | coord: 40..401 coord: 481..629 |
IPR001279 | Metallo-beta-lactamase | PFAM | PF16661 | Lactamase_B_6 | coord: 45..217 e-value: 1.5E-59 score: 200.6 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 418..436 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 418..454 |
None | No IPR available | PANTHER | PTHR11203 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR | coord: 23..781 |
IPR027075 | Cleavage and polyadenylation specificity factor subunit 2 | PANTHER | PTHR11203:SF5 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 | coord: 23..781 |
IPR035639 | CPSF2, metallo-hydrolase domain | CDD | cd16293 | CPSF2-like_MBL-fold | coord: 40..227 e-value: 8.47017E-110 score: 330.637 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk10995 ID=Tk10995|Name=Tk10995|organism=Tigriopus kingsejongensis|type=polypeptide|length=781bp LELHGRVSPSLLPRPIAMTSIIKFRPLSGGVMPADSDACPPHCYLLEVDQ FTFLCDCGWDAQFDMNIMNEIKAVINKIDAVLLSYPDIGHLGGLPYVVST LGLSCPIYATVPIYKMGQMFMYDLYQARYNMEDFKLFTLDEVDKTFEMIT QLKYNQTIQLKGKGEGIAITPIPAGHMIGGSIWKIVKEGEEDIVYAVDFN HKKEQHLNGSDIEKIQRPSLFITDGFNASYRQLRRRDRDEKLMTNILQTL RNNGNVLVCVDTAGRVLELAHMIDHLWQIQDSGLIAYSLALLNNMSFNVI EFAKSQIEWMSDKLMRNFEGRRNNPFQFKHLKLCHSMAEVNKVPSPKVVL ASMTDLECGFSRDLFLNWCGKPQNNIIITSRTGEGTLAHDLITNGTNRVL NLEIKKRIKLTGAELEEHRRKERELASKSKQSEMMMEDDESSDEEMETGG TKGPIKHDIIMKVNAPGKTQQKTFFKAIKTKHMMFPFVDEKIKWDDYGEI VKPEDWVDGTIDHEQPKADPYLRGHPNDADEGKDIVEVPTKCVSSVQKIP LKAQVQFIDFEGRSDGESIVKVLQQVKPRRLILVRGREDQCNNLANHCKQ LWAKALESSGQSQQKVNVYTPKNGETVDATTESFIYQVKLPESLVGKLLF SKGKDGLLAWVDGRISFALDEVADIQPRDDGDEAMEEAPKKKPAIPTLLP LPDDEVHAHPTVFVNELKLSDFKIVLTKSGISSEFAGGVLFCGNGNVALR RHDSGRVTIEGTVCDDYYRVRDLLYEQYAIV back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term | Definition |
GO:0006378 | mRNA polyadenylation |
GO:0006379 | mRNA cleavage |
Vocabulary: Cellular Component
Term | Definition |
GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex |
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