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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | COILS | Coil | Coil | coord: 621..648 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 76..303
e-value: 3.0E-68
score: 231.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 659..679 |
| None | No IPR available | PANTHER | PTHR24031:SF54 | ATP-DEPENDENT RNA HELICASE DDX10-RELATED | coord: 94..616 |
| None | No IPR available | PANTHER | PTHR24031 | RNA HELICASE | coord: 94..616 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 1..324 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 325..344 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 345..679 |
| IPR001650 | Helicase, C-terminal | SMART | SM00490 | helicmild6 | coord: 392..485
e-value: 9.9E-25
score: 98.2 |
| IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 352..485
e-value: 2.4E-21
score: 76.1 |
| IPR001650 | Helicase, C-terminal | PROSITE | PS51194 | HELICASE_CTER | coord: 321..525
score: 18.705 |
| IPR001650 | Helicase, C-terminal | CDD | cd00079 | HELICc | coord: 415..493
e-value: 4.05639E-28
score: 107.324 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | SMART | SM00487 | ultradead3 | coord: 106..325
e-value: 1.4E-44
score: 164.1 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | PROSITE | PS51192 | HELICASE_ATP_BIND_1 | coord: 118..300
score: 30.302 |
| IPR025313 | Domain of unknown function DUF4217 | SMART | SM01178 | DUF4217_3 | coord: 548..613
e-value: 5.4E-26
score: 102.3 |
| IPR025313 | Domain of unknown function DUF4217 | PFAM | PF13959 | DUF4217 | coord: 550..610
e-value: 1.8E-17
score: 63.2 |
| IPR011545 | DEAD/DEAH box helicase domain | PFAM | PF00270 | DEAD | coord: 111..288
e-value: 7.0E-43
score: 146.3 |
| IPR000629 | ATP-dependent RNA helicase DEAD-box, conserved site | PROSITE | PS00039 | DEAD_ATP_HELICASE | coord: 242..250 |
| IPR014014 | RNA helicase, DEAD-box type, Q motif | PROSITE | PS51195 | Q_MOTIF | coord: 87..115
score: 9.626 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 412..503
coord: 161..372 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk11286 ID=Tk11286|Name=Tk11286|organism=Tigriopus kingsejongensis|type=polypeptide|length=679bp
MSQADEPQLTLNLTTEAVERVKRPRPEVESTEEQPPGQKRSRGGEEHHLA
DGTPQDFISSLFNHNPDIPQLEAGQVEPLHEAVFTGHGFDQAGIHPHLVK
NLLDAGMVRMTQVQALAIPVILAGQDALIKSQTGSGKTLAYAVPILHKLQ
AIRPKLVRGDGAFALVVVPTRELAIQSFEWIQKLCRAFTWIVPGMLLGGE
KKKSEKARVRKGINILVSTPGRLIDHIQHTECLSLKRLMFLVLDEADRML
ELGYERDVQAIITAINEQMEGTRQTLLLSATLTTGIEQLSEVSMKHPKLI
DAAVSEENHAESLTAMTTPDRLKQAFLIVPAKLRLVSLASFILWKCRFST
SRKMLIFMSTQDMVDFHTELFQATLNAMPKRPKTLSRMNLTHDARSLLGT
EFADPQTTQKHHVPIDLLKLHGNMNQSERSSVFKRFREAEAGLLLCTDVA
ARGLDLPQVDWIVQYNPPTSKADYVHRVGRTARIGAKGSSLIFLLPSEAN
FIRELEGESLLLVEMTLDQVLKKLFMNNDSVSPKTGRPPNTLEEAATDLQ
MRMESLILSREELHQQATQAYVSFIRSYASYPRESRDIFCFKELHLGHIA
KSFALRDPPSRITGIGKGHWVDNEERKKRNLKREEHMIKAQKKRINQKSL
IVSEYSSGLDGIESTPAPVKKTMGKKPTR back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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