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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | GENE3D | 3.30.470.20 | | coord: 29..48
e-value: 8.6E-88
score: 295.5
coord: 145..267
e-value: 8.6E-88
score: 295.5 |
| None | No IPR available | PANTHER | PTHR11815:SF5 | SUCCINYL-COA LIGASE GDP-FORMING SUBUNIT BETA, MITOCHONDRIAL | coord: 25..421 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_N_REGION | Signal peptide N-region | coord: 1..2 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_H_REGION | Signal peptide H-region | coord: 3..13 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 22..422 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_C_REGION | Signal peptide C-region | coord: 14..21 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE | Signal Peptide | coord: 1..21 |
| None | No IPR available | SUPERFAMILY | 56059 | Glutathione synthetase ATP-binding domain-like | coord: 29..272 |
| IPR005809 | Succinate--CoA synthetase, beta subunit | PIRSF | PIRSF001554 | SucCS_beta | coord: 29..422
e-value: 1.3E-139
score: 463.0 |
| IPR005809 | Succinate--CoA synthetase, beta subunit | TIGRFAM | TIGR01016 | TIGR01016 | coord: 30..419
e-value: 8.9E-133
score: 440.9 |
| IPR005809 | Succinate--CoA synthetase, beta subunit | PANTHER | PTHR11815 | SUCCINYL-COA SYNTHETASE BETA CHAIN | coord: 25..421 |
| IPR005809 | Succinate--CoA synthetase, beta subunit | HAMAP | MF_00558 | Succ_CoA_beta | coord: 29..421
score: 36.956 |
| IPR013815 | ATP-grasp fold, subdomain 1 | GENE3D | 3.30.1490.20 | | coord: 49..144
e-value: 8.6E-88
score: 295.5 |
| IPR013650 | ATP-grasp fold, succinyl-CoA synthetase-type | PFAM | PF08442 | ATP-grasp_2 | coord: 30..237
e-value: 6.1E-70
score: 234.8 |
| IPR016102 | Succinyl-CoA synthetase-like | GENE3D | 3.40.50.261 | | coord: 275..421
e-value: 6.7E-55
score: 187.1 |
| IPR016102 | Succinyl-CoA synthetase-like | SUPERFAMILY | 52210 | Succinyl-CoA synthetase domains | coord: 274..419 |
| IPR005811 | ATP-citrate lyase/succinyl-CoA ligase | PFAM | PF00549 | Ligase_CoA | coord: 297..416
e-value: 7.4E-26
score: 90.7 |
| IPR017866 | Succinyl-CoA synthetase, beta subunit, conserved site | PROSITE | PS01217 | SUCCINYL_COA_LIG_3 | coord: 292..317 |
| IPR034722 | Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial | HAMAP | MF_03221 | Succ_CoA_betaG_euk | coord: 19..421
score: 53.6 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk11385 ID=Tk11385|Name=Tk11385|organism=Tigriopus kingsejongensis|type=polypeptide|length=422bp
MPILSKTASALLLKGAPGLWGAGQGVRHLNLLEYQAKGLLQEHAVTVQKF
RVASNRAEAEAITGEFPCPEYVIKAQVLAGGRGKGHFDNGFKGGVHLTKD
PSKVADLVTSMIGNRLITKQTPKDGIPVYKVMVAEAIDITRETYFCIVMD
REYNGPVIVCSPDGGVDIEEVAEKTPDRIKKIPISIEEGCTDGIANDVAD
FLGFQGDLKAQCADQVKRLYDMFVKVDCLQLEVNPLAETPQGMIYTADAK
LGFDDNASYRQKAIFDMEDTTESDPREVEAASYNLNYVQMDGNIGCLVNG
AGLAMATMDIIKLYGGEPANFLDVGGSVQEHQVKEAFRIISEDAKVKAIL
VNVFGGIVNCSTIANGVVNACRSINLTLPLVVRLEGTNVDEAKRILADSG
LPIQSAVNLDDAAKKACAALKK back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0003824 | catalytic activity |
| GO:0004776 | succinate-CoA ligase (GDP-forming) activity |
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