Tk11513, Tk11513 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk11513
Unique NameTk11513
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1116
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018999RNA helicase UPF1, UPF2-interacting domainPFAMPF09416UPF1_Zn_bindcoord: 128..278
e-value: 2.1E-72
score: 242.0
NoneNo IPR availableGENE3D3.40.50.300coord: 709..919
e-value: 2.1E-69
score: 235.0
NoneNo IPR availablePFAMPF13087AAA_12coord: 686..881
e-value: 7.6E-59
score: 198.6
NoneNo IPR availableGENE3D2.40.30.230coord: 331..420
e-value: 9.7E-37
score: 126.8
NoneNo IPR availablePFAMPF13086AAA_11coord: 477..578
e-value: 6.8E-20
score: 71.8
coord: 581..677
e-value: 1.6E-23
score: 83.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1078..1116
NoneNo IPR availablePANTHERPTHR10887:SF388REGULATOR OF NONSENSE TRANSCRIPTS 1coord: 3..1108
NoneNo IPR availablePANTHERPTHR10887DNA2/NAM7 HELICASE FAMILYcoord: 3..1108
NoneNo IPR availableCDDcd00046DEXDccoord: 495..551
e-value: 1.58238E-6
score: 46.5616
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 126..194
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 472..544
coord: 571..897

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold33_size549341-snap-gene-0.19-mRNA-1maker-scaffold33_size549341-snap-gene-0.19-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk11513 ID=Tk11513|Name=Tk11513|organism=Tigriopus kingsejongensis|type=polypeptide|length=1116bp
MESASMTFLDPEDQDLALGDTQGDEFGFQFTLPSQSQLGGGLALSGLEFT
ADHTSQVEGITANGTTLLSEATHELQFEDEDDLELRGGRIKPKGLASQDP
DEEDDEEEDELGAAVAQRDDSGTLPTTSCKYCGIHDPSSVVLCAICQKWF
CNGRGNTSGSHIVNHLVRAKHKEVILHKDGPLGETVLECYSCGTRNVFVL
GFIPAKADSVVILLCRHPCASQNALKDMNWEQEQWRPLIHDRSFLSWLVK
VPSDPEQLRARQISATQMNKLEDMWKDNMEADFLDLEAPGRDDEPAQVLL
RYEDGYQYQNIFGPLVKLEADYDKKWKESQTQENIDVRWDQGLNKKRIAY
FNLIKNDSDLKLMPGDELRLRYLGDLAKPWSGLGHVIKIPDNYGDEVGIE
MKSNAGIPTECTKNFVIDFVWKATSFDRMQNALKKFAVDDSSVSSYIYHK
LLGHEVEDVLFRSQLPRHFSADNLPELNRSQVYAVKHALQRPLSLIQGPP
GTGKTVTSATIVFQLVKQKGGPVLVCAPSNTAVDQLTQKLDQTGLKVVRV
CAKSREAIDSPVAHLALHNQIKNLEGFSELRKLQQLKDETGELSSSDEKR
FRSLRKQAEKELLSVADVVSCTCIGAGDPRVIRMKFPSILIDESMQATEP
ECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKGGLSQSLFERLVVLGIR
PLRLEVQYRMHPELSSFPSNFFYDGTLQNGVSGEDRRLAIDFPWPQADKP
TFFYASTGQEEIAGSGTSYLNRTEASNVEKLTTKFIRAGIRADQIGIITP
YEGQRAYLVQFMQYQGSHHPKIYQSIEIASVDAFQGREKDIIIISCVRSN
DYQGIGFLADPRRLNVALTRAKYAAIIVGNPKVLAKQLLWNHLLQHYKDN
GILVEGPINNMKPSPIQFPKPKRLNNAFNPGTHFMNTTIFSAKEALATPY
HAHLHPSGGRAMSHHPNMAPPHGQLPPQRNNFNRGSQFIAHDNMNAIQED
FSKLQTSMPIPVGMFVNMSHIPPRFLPKTERPNHYRQGAGGGNTQASMLS
QDMERTQNNTLTQGNNLSLGMSLNDYGSEFSQGEMSQDVGRGLRSTTDGF
LSQDSMYQGPRYNSQN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018999RNA-helicase_UPF1_UPF2-interct
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO:0005524ATP binding
GO:0003677DNA binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
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