Tk11844, Tk11844 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk11844
Unique NameTk11844
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length741
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 519..546
NoneNo IPR availableCOILSCoilCoilcoord: 415..435
NoneNo IPR availableCOILSCoilCoilcoord: 209..253
NoneNo IPR availableCOILSCoilCoilcoord: 466..514
NoneNo IPR availableCOILSCoilCoilcoord: 259..409
NoneNo IPR availableGENE3D1.20.5.170coord: 484..568
e-value: 5.7E-16
score: 60.8
NoneNo IPR availableGENE3D1.20.5.1160coord: 207..301
e-value: 4.4E-17
score: 64.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 572..598
NoneNo IPR availablePANTHERPTHR23239:SF157LAMIN-B1coord: 205..572
NoneNo IPR availableSUPERFAMILY64593Intermediate filament protein, coiled coil regioncoord: 211..245
NoneNo IPR availableSUPERFAMILY64593Intermediate filament protein, coiled coil regioncoord: 496..567
IPR039008Intermediate filament, rod domainSMARTSM01391Filament_2coord: 211..567
e-value: 2.5E-15
score: 66.9
IPR039008Intermediate filament, rod domainPFAMPF00038Filamentcoord: 211..567
e-value: 1.1E-52
score: 179.4
IPR039008Intermediate filament, rod domainPROSITEPS51842IF_ROD_2coord: 212..568
score: 28.618
IPR001664Intermediate filament proteinPANTHERPTHR23239INTERMEDIATE FILAMENTcoord: 205..572

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1129_size60621-snap-gene-0.13-mRNA-1maker-scaffold1129_size60621-snap-gene-0.13-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk11844 ID=Tk11844|Name=Tk11844|organism=Tigriopus kingsejongensis|type=polypeptide|length=741bp
LLMRPTPHGQVMRLISCETPWVNSPFPAPARPAPSTRHSAGLAMPHPRPA
CSDRKARRASAATRKRLRPRLRPANSRTFSANRPSTKCAKKRLIGPVNSS
CNSISSSRRQPSSWPDKTTRTCPSRISSTIRTSPTMSCARGRPAPRDESS
RATPRETKKSTENITRIVETMHRPSTGQSGRYKSTNSLHDLGLDNYPNPE
YPESSRLTRKEEKQSLQNLNNRLAGYIDRVRQLQQENAKLVRQVKTVEEY
QSKEINNVKDIYDKQIDDLKTSLESMNKQYNQLKVGAEGLLSENEDLKDR
MSKKDRDLLNANNHGNALEDEMRELSSRMKKLEQDRQRAQDELKDALPEL
EVLRKKLSDLKRVLDDEQLKKADLENQCARLEEDLKFKLQLLEKELTEVK
HRKEVEINEMDGKLQEEYETRLQKALEELRGVYDRQMQQSREDFAKLYDD
RIRDLQSQLTHERGSNASSNQEMKESRARIEALISKVSDLEGANLALNQK
IAELAQDMEDQKSSHRSQMAAKDDEIKRLLDELSHQLKEYQNLQDLKIQL
DMEIAVFRSLIESEEDRLGLGDRSLDLSDSSDSQHTKTRVEHKKESTFQR
KVQGHAFQDGSLGPKPEMRPDLLLTRSRRVVRTHAEMSKLHQTSILVQGS
EQGHGILGRIPTLILVTSGNGHFHETIIYISIGQIGLENARILQEINYPA
CSRLSRPMHSGALCPIVDVPKWQELDLTYFVEHELDAVSMS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039008IF_rod_dom
IPR001664IF
Vocabulary: Cellular Component
TermDefinition
GO:0005882intermediate filament
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
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