Tk11936, Tk11936 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk11936
Unique NameTk11936
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length501
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 101..174
e-value: 2.1E-21
score: 87.1
coord: 289..360
e-value: 1.7E-13
score: 60.8
coord: 203..275
e-value: 2.1E-15
score: 67.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 290..346
e-value: 5.8E-9
score: 35.5
coord: 204..272
e-value: 9.6E-11
score: 41.3
coord: 102..171
e-value: 1.8E-14
score: 53.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 288..364
score: 13.362
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 100..178
score: 16.978
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 202..279
score: 14.505
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 46..184
e-value: 1.6E-24
score: 88.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 283..367
e-value: 1.6E-15
score: 58.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 185..282
e-value: 1.9E-18
score: 68.7
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 407..490
e-value: 1.9E-7
score: 32.5
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 408..487
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availablePANTHERPTHR43921:SF2HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATEDcoord: 284..369
NoneNo IPR availablePANTHERPTHR43921FAMILY NOT NAMEDcoord: 93..277
NoneNo IPR availablePANTHERPTHR43921FAMILY NOT NAMEDcoord: 284..369
NoneNo IPR availablePANTHERPTHR43921:SF2HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATEDcoord: 93..277
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 417..481
score: 9.582
NoneNo IPR availableCDDcd00105KH-Icoord: 419..482
e-value: 0.00317201
score: 34.0728
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 199..282
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 91..182
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 285..365

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1303_size49631-snap-gene-0.15-mRNA-1maker-scaffold1303_size49631-snap-gene-0.15-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk11936 ID=Tk11936|Name=Tk11936|organism=Tigriopus kingsejongensis|type=polypeptide|length=501bp
LPSVTDKKPKKTVTMNPPSSDVGKAAVNRKRSAVVKSTSGSEWSWEDEML
MYDVCHRDTVKKRRIRSKEETSGTAAAVAVEKRRLEKQKQDDAMYMREER
KLFLGGLAPETIEKDLRRHFSQFGQIVDVQVMRDREKGGVSRGFGFVTFG
CSFMAETAMEHKDHTINGRQIEPKYATADRPRYKKTLPQMEADLKDECKH
KRSIFVGALKDTITEDDLVQYFGGFGQVIRAVKMTDRESGTKKTFGFVDF
ADFGVVMKVMNCTKHFIQGKRIRVELSRPRIEFSHQTKTVFVGGLEDGID
DPELKKYFSEFGFVNRAIRIPNKDEPKRKYGFVDFDAYDAVDIVVSQREH
YIQGHRVRVELALPMVNDSLYEKDIVVPSETWLEKVQRKLQYAVPDQGTW
GETLNNYEVFVQSGSEVATSQFKIARGLLEYVVGMGGKVVEEIANDSNTR
IVLTKPPLGAKHVVFAITGKKTDVGCAQYIFQQIVKSNRDKLNAPRPIIN
S
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR036612KH_dom_type_1_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
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