Tk11946, Tk11946 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk11946
Unique NameTk11946
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1058
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typePRINTSPR00619GATAZNFINGERcoord: 807..824
score: 56.25
coord: 789..806
score: 54.34
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 787..837
e-value: 4.8E-22
score: 89.2
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 793..825
e-value: 4.7E-14
score: 51.6
IPR000679Zinc finger, GATA-typePROSITEPS00344GATA_ZN_FINGER_1coord: 793..817
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 787..840
score: 27.998
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 792..843
e-value: 8.98078E-23
score: 90.1246
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 783..843
e-value: 6.9E-29
score: 101.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1037..1058
NoneNo IPR availablePANTHERPTHR10071:SF23TRANSCRIPTION FACTOR GATA-6coord: 749..852
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 789..848
IPR039355Transcription factor GATAPANTHERPTHR10071TRANSCRIPTION FACTOR GATA GATA BINDING FACTORcoord: 749..852

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold2683_size13302-snap-gene-0.4-mRNA-1maker-scaffold2683_size13302-snap-gene-0.4-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk11946 ID=Tk11946|Name=Tk11946|organism=Tigriopus kingsejongensis|type=polypeptide|length=1058bp
MENEADEGEDTFGMADNITESDFDWAVPVVAEESLDKLTTMFTIYPVVDE
GISVAVADSHPSRTNGFLTGCLLNVLRDYTRPSIEDLPRILNDEMAMESD
KAKVFAGVECKADFIPVGKKSGETRVANELDAPVPPRPLNQPALACLHKD
KTATAPTSKPARAGMFVRDYNEAALENLSFGQSSPSLDLSSLVEYEDLIS
LATEGAPLDESRIPTSAGAWSCRRRCSGDEVGRRKMSVDAAQEAYTFNPR
SFPASAPGLVNRASIERLSLPVHNQKEAKKIILLPRMESKSEEIESANAA
KSSSNAGAEAASTSAESPDQARDYIKYETNDSPSEEKPPLLPQGEGDVKP
NIGDPASSPFPLDQAKAELSPPESKASSLDSVNIVVPQPPPASDEKGEID
LGQSYSFSIQSSGATSQGVVNVPVVSLAHLNVIQYVEGRHIPLQLTDVGG
EHMDFDVFQGNPNLIQTGTDERGVVHFVRDDGKDQNTYEYHGALYERGQH
LDGTIPILTSNGQPDALRTAVESAEVDKVDSLVLAPAPHCNSRAFENPPP
YMEPDHDSRLIRGDTYLYNTENVESPTYTQLENAVSFSRANQGSANGIYS
TIASSNNVQKTEYDSPIYNIRANCNGQSRQNIYDPTLGTNGIGSQVYVDP
MKAEGHWNQHRQPYEYGQGTQRLDNDPFNTSGVKHPDLGNFGHYVPTAAV
QHHTTGASHSSGLMDPSLDIGINALSSCTICGGAVGDVTLRRNNYQPSTC
DSCTTHSKYNGIRGTTSGGRPSSSGRTNRNATPPANRRTGLTCANCQTTT
TTLWRRNNQGDPVCNACGLYYKLHGINRPNTMKKEGIQTRKRKPKNAPGK
ESNNKKLSSSYYYLKQGEGDSSKSEDPGIFRMTEFHCPASNDSISERGGE
DSAKSSSDLTHSYVTPDQLTMNTLEDHSSVNAQDIHQPTFHINLMSRQNQ
PFTLTNPVDVPGAYERNTALASLESMETATTIIVSEPFTTEGLILNPTVS
EVSSLSDGIPVHSNGSLDTTSVNQSPAVIAVSNLSAQTPWPLPDTSRSLQ
DATEQSND
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA
IPR039355Transcription_factor_GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
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