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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 409..429 |
| None | No IPR available | CDD | cd02187 | beta_tubulin | coord: 3..427
e-value: 0.0
score: 888.837 |
| IPR000217 | Tubulin | PRINTS | PR01161 | TUBULIN | coord: 94..105
score: 76.26
coord: 371..399
score: 66.66
coord: 107..131
score: 68.24
coord: 191..211
score: 69.69
coord: 133..151
score: 79.22
coord: 177..190
score: 79.11
coord: 52..71
score: 62.39
coord: 11..31
score: 68.4
coord: 152..173
score: 57.45 |
| IPR000217 | Tubulin | PANTHER | PTHR11588 | TUBULIN | coord: 13..441 |
| IPR002453 | Beta tubulin | PRINTS | PR01163 | BETATUBULIN | coord: 413..431
score: 93.14
coord: 348..371
score: 77.88
coord: 330..344
score: 80.72
coord: 109..127
score: 85.35
coord: 266..282
score: 74.08
coord: 42..59
score: 55.71
coord: 153..165
score: 90.86
coord: 231..240
score: 69.77
coord: 213..225
score: 85.45
coord: 246..259
score: 81.92
coord: 378..389
score: 80.76
coord: 89..100
score: 88.81
coord: 312..330
score: 76.48 |
| IPR002453 | Beta tubulin | PANTHER | PTHR11588:SF256 | SUBFAMILY NOT NAMED | coord: 13..441 |
| IPR018316 | Tubulin/FtsZ, 2-layer sandwich domain | SMART | SM00865 | Tubulin_C_4 | coord: 247..384
e-value: 7.0E-50
score: 181.7 |
| IPR018316 | Tubulin/FtsZ, 2-layer sandwich domain | PFAM | PF03953 | Tubulin_C | coord: 262..382
e-value: 9.5E-42
score: 142.1 |
| IPR003008 | Tubulin/FtsZ, GTPase domain | SMART | SM00864 | Tubulin_4 | coord: 48..245
e-value: 4.6E-71
score: 252.1 |
| IPR003008 | Tubulin/FtsZ, GTPase domain | PFAM | PF00091 | Tubulin | coord: 4..212
e-value: 2.3E-70
score: 236.7 |
| IPR023123 | Tubulin, C-terminal | GENE3D | 1.10.287.600 | | coord: 375..444
e-value: 3.5E-35
score: 121.7 |
| IPR036525 | Tubulin/FtsZ, GTPase domain superfamily | GENE3D | 3.40.50.1440 | | coord: 2..264
e-value: 3.2E-127
score: 425.5 |
| IPR036525 | Tubulin/FtsZ, GTPase domain superfamily | SUPERFAMILY | 52490 | Tubulin nucleotide-binding domain-like | coord: 3..244 |
| IPR037103 | Tubulin/FtsZ, C-terminal domain superfamily | GENE3D | 3.30.1330.20 | | coord: 265..374
e-value: 2.0E-54
score: 184.6 |
| IPR017975 | Tubulin, conserved site | PROSITE | PS00227 | TUBULIN | coord: 141..147 |
| IPR008280 | Tubulin/FtsZ, C-terminal | SUPERFAMILY | 55307 | Tubulin C-terminal domain-like | coord: 245..430 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk11967 ID=Tk11967|Name=Tk11967|organism=Tigriopus kingsejongensis|type=polypeptide|length=444bp
MTREIVHIQAGQCGNQIGAKFWEIISDEHGVDPTGTFQGDSELQEERIDV
YYSEVSKGKYVPRCVLVDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGN
NWAKGHYTEGAELVDSVLDVVRREAESCDCLQGFQLTHSLGGGTGSGMGT
LLISKIREEYPDRIMVTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET
FCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGITTCLRFPGQLNAD
LRKLATNMVPFPRLHFFMPGFAPLTARGNQGYRALSVPELTQQMFDTKNM
MAACDPRHGRYLTVAAIFRGRMSMKEVDDQMLSIQNKNSSYFVEWIPSNV
KTAVCDIPPRGLKMAATFIGNSTSIQELFKRISEQFTAMFRRKAFLHWYT
GEGMDEMEFTEAESNMNDLVSEYQQYQDATAEDDYDDDEEEDYN back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005874 | microtubule |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007017 | microtubule-based process |
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