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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR001650 | Helicase, C-terminal | SMART | SM00490 | helicmild6 | coord: 313..394
e-value: 5.9E-21
score: 85.6 |
| IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 286..394
e-value: 1.2E-21
score: 77.1 |
| IPR001650 | Helicase, C-terminal | PROSITE | PS51194 | HELICASE_CTER | coord: 289..435
score: 18.586 |
| IPR001650 | Helicase, C-terminal | CDD | cd00079 | HELICc | coord: 279..402
e-value: 8.39808E-29
score: 109.635 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | SMART | SM00487 | ultradead3 | coord: 72..269
e-value: 3.6E-44
score: 162.7 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | PROSITE | PS51192 | HELICASE_ATP_BIND_1 | coord: 84..254
score: 24.668 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 53..258
e-value: 1.7E-59
score: 202.5 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 261..442
e-value: 1.1E-37
score: 130.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 473..498 |
| None | No IPR available | PANTHER | PTHR24031:SF159 | ATP-DEPENDENT RNA HELICASE DDX20-RELATED | coord: 39..581 |
| None | No IPR available | PANTHER | PTHR24031 | RNA HELICASE | coord: 39..581 |
| IPR011545 | DEAD/DEAH box helicase domain | PFAM | PF00270 | DEAD | coord: 78..242
e-value: 4.4E-35
score: 120.9 |
| IPR000629 | ATP-dependent RNA helicase DEAD-box, conserved site | PROSITE | PS00039 | DEAD_ATP_HELICASE | coord: 200..208 |
| IPR014014 | RNA helicase, DEAD-box type, Q motif | PROSITE | PS51195 | Q_MOTIF | coord: 53..81
score: 8.938 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 121..409 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk12061 ID=Tk12061|Name=Tk12061|organism=Tigriopus kingsejongensis|type=polypeptide|length=767bp
MASPNQGLGPPSAAGRVVRLAHEFEATPEGEGQSEERLWTRTQDVWAEEL
KDKTFAHFQLGEKIQFGLSNAGFLRPSPVQWQALPVAHLGLDLVVQAKSG
TGKTLVFVLTALEKVDLSLKSVQTLVLAPTREIAVQGARVALEVGAGLPG
LKVNAFIGGTSLQDDVTKLKKCHMAVGSPGRIKQLIMEKYLKTDHVGLLV
LDEADKLMSADFQSDLRWIFQRLPARPQVMALSATYPQDLEALVETFMHN
PHHVRLGQEDQVLTGLSQFVYLVRAHPQVEKQTRHKMKALLDLLATVSFN
QCLVFSNYSVRAEAMCRQATAQGWPALFIAATQDQAERLQAINSLKQFQC
RVLFSTDLTARGIDAQNVDLVINVDVPWDSATYLHRIGRAGRFGSRALAV
SLCPEEGTEMENLRKIVFRTGSKIAIIPKEEKNKKKEDDSEADFDLWTCD
REPLSLLEPLECATDEEQDFYRAKQGKVKKRGGKSPTKTEDPGPTNLGWI
EVPEVEKILNKPVVGINLLHQWHQRGEEDEEEEQEEYFEEEFDGEEDEAY
ASEPTEIQLRNAGTLLKSFFFANHKRETVQIPPESAHVTLEAMEKDIEHF
QSGQAMTQRFTQSTIIPQEIPEQVQEAATLILAHSRGRFEAKADDAKARL
SSVGVREALEIVKNRGHLPPLPGELESEQYYEHKESSETPISRDQWQSVP
ESVGNFDFPYALPHPNPNAVIPSGSEANNTGQWFLEWHRMVQENKQFIQD
MEFFQQMQAVQGYVPEQ back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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