Tk12085, Tk12085 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk12085
Unique NameTk12085
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1034
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1025..1034
NoneNo IPR availableGENE3D3.30.70.2460coord: 871..942
e-value: 7.2E-17
score: 62.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 417..710
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 674..691
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 631..673
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 434..483
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..542
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 558..583
NoneNo IPR availablePANTHERPTHR12135:SF0DNA REPAIR PROTEIN COMPLEMENTING XP-C CELLScoord: 840..977
NoneNo IPR availablePANTHERPTHR12135:SF0DNA REPAIR PROTEIN COMPLEMENTING XP-C CELLScoord: 124..515
NoneNo IPR availablePANTHERPTHR12135:SF0DNA REPAIR PROTEIN COMPLEMENTING XP-C CELLScoord: 620..826
IPR018328Rad4 beta-hairpin domain 3SMARTSM01032BHD_3_2coord: 865..939
e-value: 1.4E-33
score: 127.6
IPR018328Rad4 beta-hairpin domain 3PFAMPF10405BHD_3coord: 865..937
e-value: 1.4E-23
score: 83.0
IPR036985Transglutaminase-like superfamilyGENE3D3.90.260.10coord: 682..820
e-value: 3.7E-16
score: 61.0
IPR018325Rad4/PNGase transglutaminase-like foldPFAMPF03835Rad4coord: 684..812
e-value: 1.4E-15
score: 57.2
IPR004583DNA repair protein Rad4PANTHERPTHR12135DNA REPAIR PROTEIN XP-C / RAD4coord: 840..977
IPR004583DNA repair protein Rad4PANTHERPTHR12135DNA REPAIR PROTEIN XP-C / RAD4coord: 124..515
IPR004583DNA repair protein Rad4PANTHERPTHR12135DNA REPAIR PROTEIN XP-C / RAD4coord: 620..826
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 284..400
coord: 720..825

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold60_size442463-snap-gene-3.29-mRNA-1maker-scaffold60_size442463-snap-gene-3.29-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk12085 ID=Tk12085|Name=Tk12085|organism=Tigriopus kingsejongensis|type=polypeptide|length=1034bp
MSSSAGGSRRSLRARPAPRSQPVAEPEADDEAVAGEWASSGSDFEDDLKK
VRVLGPGRRARASEPVSSEDEDEAMPPNRAQPTRVVPKKKLLARAATPPP
SSLVPVVPGHLGSQLELSSSSSSEDDEAASQRQPPPEPIIEAPRTPSPAQ
KKAPKKRRTRTEALVESQLLNLAQSCSQADSQPWQKLDSPQPTSSSVDPL
SASKYAQEVAEALALGGEALTGSEEEDEAMDTVHEEPPPQVGTQNIEVTL
ALPETKRKRKAFDMEKYVQREINRVRKETQLWMHQTHILCLFAHLRYFNM
VLSDPLLVGTLLSLIPEANSFPHAKLTPLRLSRCLEWFQTVFQFQEDAQR
AVDFPWPYQKHLLHLVEKGRYTCNEELVFLFLIVTKAQKWPSRLVMNLNP
VALKPDKSNMELSTKKIKTEVEDIKPDPGQVGKDTESMTESPKLEISQKS
PPKKISHTSTQNNGAKKPAKRGTSNTPKKTEISTSSTKTKKAKKPAQKDT
SIKEEIAKTPTRSSRKSSKGSRQIDCPEEESTASETSKKSTKVQKGRKPA
QASVASDSKNKTKDREDSSNRKSTRDARGSGRDKQSKPTAMSARDHSPIR
KQSKTRSGRSSKRPKYEESDDEEAEEESEDESPLKAVKSQRTSKRAKDES
PQPKKLTKKAVGEAKRRQSSSLKDLIIKTEGSSSESEFSSMSKRKTLPEK
KPASTSKKASQSSSKFIPVNYWVEILIENKWECVDVVRRKVGTAMEMEDR
CSKPMMYVIGCDGRGQLKDVTKRYAKNFMTHNRKLRVDQNWFAQSINRFA
PPKGALDDLENEHIEQSLQSMPIPTTGGPKWDKMTSSVVSGTPLDLFGKW
QTEVYMPPPAVDGKVPRNEYGNVELFQPWMLPKGTVHIPIKGISRLAYKL
KIDCAPAMMGWDSTCGWPKPILEGSIVCEEFQEILMDAWNTDQEEKAKRD
EEKREKRVLDNWKKLIKGMLIVQRLKENGFDGGLGLGGELIEEDESSLDE
DELDELATLILDVAEAAGFFCGTASRGGESDSAE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018328Rad4_beta-hairpin_dom3
IPR036985Transglutaminase-like_sf
IPR018325Rad4/PNGase_transGLS-fold
IPR004583DNA_repair_Rad4
IPR038765Papain_like_cys_pep_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003684damaged DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
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