Tk12108, Tk12108 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk12108
Unique NameTk12108
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length406
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 35..49
score: 33.22
coord: 83..97
score: 33.53
coord: 331..345
score: 32.14
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 8..48
e-value: 1.4E-5
score: 34.5
coord: 133..174
e-value: 0.39
score: 19.6
coord: 55..96
e-value: 6.6E-6
score: 35.6
coord: 305..344
e-value: 2.6E-6
score: 37.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 56..95
e-value: 0.066
score: 14.0
coord: 310..344
e-value: 3.3E-5
score: 24.5
coord: 14..47
e-value: 4.1E-4
score: 21.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 16..57
score: 10.876
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 312..344
score: 11.745
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 11..361
e-value: 2.1E-71
score: 242.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..406
IPR037597Nucleoporin Seh1PANTHERPTHR11024:SF3NUCLEOPORIN SEH1coord: 14..373
IPR037363Sec13/Seh1 familyPANTHERPTHR11024PROTEIN TRANSPORT PROTEIN SEC13-RELATEDcoord: 14..373
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 312..353
score: 10.074
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 16..105
score: 14.292
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 140..344
coord: 10..105

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold97_size377342-snap-gene-0.14-mRNA-1maker-scaffold97_size377342-snap-gene-0.14-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk12108 ID=Tk12108|Name=Tk12108|organism=Tigriopus kingsejongensis|type=polypeptide|length=406bp
MATAEATTPYQCQTLDSDHKDLVHDVSFNWYGTRLATCSSDQSLKIWEWN
QEQQTWECSATWKAHSGSVWKVNWAHPEFGNVLATCSFDRTAAVWEEMPG
DSYLLASTVAAAGQVGPGNPNAPANPDGPSQSHWVKKAAMVDSRTSVTDV
KFAPKALGLLLATCSADGTLRIYEASDVMNLGNWTLQHEIHTKLPSSCIC
WNHAIAKFLPPVLAVGSDDATTAGGKVFIFEYHESTRRWINIETLSSVSD
PVHDMAFSPNVGRSFSILGITSKELKIVTLKPKPQEQMDASTSVEQRHPF
VSKYEVKLAGSFNDHKSTVWRLCWNFTATVLATSGDDGNVRLWKCNYKDN
WHCVAVLKGDGSNASISNPTQMNHPNMAVLKGQNSNTSSQGSASSSYQHP
TGLLRK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR037597Nucleoporin_Seh1
IPR037363Sec13/Seh1_fam
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005198structural molecule activity
Add to Basket