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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | GENE3D | 1.20.1640.10 | | coord: 763..949
e-value: 1.0E-13
score: 53.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 968..993 |
| None | No IPR available | PANTHER | PTHR10796:SF182 | SUBFAMILY NOT NAMED | coord: 38..952 |
| None | No IPR available | PANTHER | PTHR10796 | PATCHED-RELATED | coord: 38..952 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 72..376 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 582..605 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 910..914 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 606..799 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 915..938 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 51..71 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 870..889 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 396..406 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 433..438 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 800..829 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 377..395 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 510..534 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 499..509 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 407..432 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 830..840 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 535..581 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 439..460 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 841..869 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 480..498 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 1..50 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 461..479 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 890..909 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 939..993 |
| None | No IPR available | SUPERFAMILY | 82866 | Multidrug efflux transporter AcrB transmembrane domain | coord: 335..534 |
| None | No IPR available | SUPERFAMILY | 82866 | Multidrug efflux transporter AcrB transmembrane domain | coord: 759..946 |
| None | No IPR available | TMHMM | TMhelix | | coord: 511..533 |
| None | No IPR available | TMHMM | TMhelix | | coord: 822..844 |
| None | No IPR available | TMHMM | TMhelix | | coord: 51..73 |
| None | No IPR available | TMHMM | TMhelix | | coord: 851..873 |
| None | No IPR available | TMHMM | TMhelix | | coord: 372..394 |
| None | No IPR available | TMHMM | TMhelix | | coord: 799..818 |
| None | No IPR available | TMHMM | TMhelix | | coord: 482..504 |
| None | No IPR available | TMHMM | TMhelix | | coord: 893..915 |
| None | No IPR available | TMHMM | TMhelix | | coord: 922..944 |
| None | No IPR available | TMHMM | TMhelix | | coord: 409..431 |
| None | No IPR available | TMHMM | TMhelix | | coord: 438..455 |
| None | No IPR available | TMHMM | TMhelix | | coord: 582..604 |
| IPR003392 | Protein patched/dispatched | PFAM | PF02460 | Patched | coord: 328..945
e-value: 2.1E-94
score: 317.1 |
| IPR000731 | Sterol-sensing domain | PROSITE | PS50156 | SSD | coord: 376..535
score: 36.21 |
| IPR000731 | Sterol-sensing domain | PROSITE | PS50156 | SSD | coord: 825..944
score: 10.563 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk12251 ID=Tk12251|Name=Tk12251|organism=Tigriopus kingsejongensis|type=polypeptide|length=993bp
MLEDVAASSPKSTSVAGSLSGVSVISSQEEEIITDESLSSDSAYGLKVSR
WPLSFTLASLLVCSLCMLGLLNYSEEGNPYKLWIPQNSDFVRNTDWLWTN
FPPDLRFHSVIIKADNVLEPSVIQHILKIHDSVAKLSTKNGLTWSDKCYQ
LPVVDLNISFDQGAFLDDGNATVLDFSDADYNYDYYYEDPTTLNRSHSVS
KRNIQGMPDPSIELYPVDYCEIVKEITQSACFESSLLELWAPDDYGVVTH
DVVKRLTIEDILAKINKPVGFSEVFKRPVDFTQYLGGISRNASGSIIGAK
ATFIRFFGKINASAITEDAQVSTGKGQPVDEVTLEFESELLKALRAPKVH
ADPNIVVYLNVARSFNDLSEKVINTDVLLFGVGFGIVFIYVQLSLGKLNL
VEQRPFLSAVGIGCIALTVFTSYGLCSLMGFVFSPMHNIIPFLLLGIGID
DMFVICQSLDNLPPDPSLTVETRVALAMKHAGVAITVTSITDVAVFAIGA
STVLPALRSFCVFCAVGILVVYILQATIFVAALAKDSQRIASHRNGFLIC
YQHKNWTPQAWSQKNLLQTAFYHLGRCLVKPFVKVAVIVCSLLLLAGGSY
GLYLLRQEFNPIWFIPPESYLSQWFAANEKFFPEEGERVTINIGPIDYSE
ELWKINLLVDKLKNETEIVSSVDSWFSGFKDYMEKNDLVQDFFETFHVNN
TEFYFRLTQFLFSPNGAKYRTNFQFDQNIICGQESPSVMLSTIQFTHHLF
EGPSEHIPAMNKIKGIVKSMNFSSRAFAVANEYASWETDEIIAQETVRNL
LISVVCVFVTTIVLIGNFKACALVLLSVLMTLVNVGGFMHFWGLTIDVVS
CVNLVIAVGLCVDYSAHIAHAFMTCSGSKNERTIKAMRDIGPAVLNGGFS
TFLAFALTVTSQSHVFATFFKIFFLVVVFGLFHGLIFLPVSLSLLGPEPL
AVVPAKAPTLTKTPSVKSWFAKQDPPPVDLLSDYIQDKPDKEP back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
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