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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1260..1287 |
| None | No IPR available | GENE3D | 2.40.50.140 | | coord: 310..397
e-value: 1.8E-5
score: 26.5
coord: 90..192
e-value: 1.2E-9
score: 40.0 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 1170..1382
e-value: 2.1E-23
score: 85.0
coord: 888..1069
e-value: 1.6E-23
score: 85.3 |
| None | No IPR available | PFAM | PF13086 | AAA_11 | coord: 914..1360
e-value: 1.9E-23
score: 83.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1393..1412 |
| None | No IPR available | PANTHER | PTHR10887 | DNA2/NAM7 HELICASE FAMILY | coord: 708..1387 |
| None | No IPR available | PANTHER | PTHR10887:SF341 | NFX1-TYPE ZINC FINGER-CONTAINING PROTEIN 1 | coord: 558..693 |
| None | No IPR available | PANTHER | PTHR10887 | DNA2/NAM7 HELICASE FAMILY | coord: 558..693 |
| None | No IPR available | PANTHER | PTHR10887:SF341 | NFX1-TYPE ZINC FINGER-CONTAINING PROTEIN 1 | coord: 708..1387 |
| IPR011129 | Cold shock domain | SMART | SM00357 | csp_8 | coord: 110..176
e-value: 5.2E-4
score: 29.3
coord: 318..378
e-value: 3.2
score: 4.4 |
| IPR002059 | Cold-shock protein, DNA-binding | PFAM | PF00313 | CSD | coord: 110..170
e-value: 3.3E-7
score: 30.0 |
| IPR002059 | Cold-shock protein, DNA-binding | CDD | cd04458 | CSP_CDS | coord: 110..171
e-value: 1.91434E-9
score: 52.9662 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 910..994
coord: 1297..1382 |
| IPR012340 | Nucleic acid-binding, OB-fold | SUPERFAMILY | 50249 | Nucleic acid-binding proteins | coord: 107..171 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk12257 ID=Tk12257|Name=Tk12257|organism=Tigriopus kingsejongensis|type=polypeptide|length=1412bp
MTDNVGMLRRVPYSKQPDLEFSLDEIGNNTREPITIVPGSLVSFKTDDRN
YVTLVLVDVHSKTVQAIPEPEDEMACQKVCLKEYDQANQHIVSRTLNESQ
KKNLMEKGHKGTLKVFKPKGFGFIQSPSFDKDVFIHIQKMYSSSGQVIPS
AGQSVLFILDKPSEGKKLSAELASIQTSSAKSEDMVSTQKAIETSSSDHT
LARKNTVHRKPTSQQREHLKSHGIQGVVSGYFQESMHGFCQVTQSMPIGF
PKKNVFFHIGQLFTEGKPLIPDSGQKITFVLGQNDPSYLKVDIGCLEANL
GKDSSVHGPRLATWILPTGTVVKIVEDKKYAFVTPNGGGKDHFMYLNKIS
EYSLPLKVGDVIKFKASEMSGKTSIHKAQMETFTPRSGEEMTTYFKRIHA
GVQTPKAYSLTLELSKLRTLWLYCGNHGKGDPDFGSYAKEFLKMITEFLK
EKSPSVDPEEPLSHLFKDTDFVERMVKTFLEAGVDSDFFEAFVPFCKQII
TYVPKFVPNLFPLVQMGSKENMESLLFFTIIRQISETLQGGWKSIPEAIT
EEELARNDLIAGDPNLLPVKKDSPYDSVQEYMDTYFRLLRAEAFYGIQRG
IAQFRGGELDLHDMNVYIDITLVAIDLQRLRMVLSFTPLKKVKNWEKSKG
LMGGNLLCVCSDNQFKKVVWFTVADRDIDMLNKYSQVIVELCSFNTLTMA
EILTSXYFRLLRAEAFYGIQRGIAQFRGGELDLHDMNVYIDITLVAIDLQ
RLRMVLSFTPLKKVKNWEKSKGLMGGNLLCVCSDNQFKKVVWFTVADRDI
DKLNKNSQVIVELCSFNTLNMAEILTSLHAGGGKSIMVESPTYFKAISPA
LDTLRDIKLDDFGLGDAIVHANLPCWSPSWALEVGDERFDCGELEETENL
EAVGQFVEQAKLTMDSAQKVAFEHALCSPLAIIQGPPGTGKTFIGTKLME
AILLSKPNSPILVLTYKNHALDEFLKHCLKFCTLDDIVRVGGRSKAEELD
ECNLMQILQSEKVFMSQDLIEIRKEVESDLASLTSEIADHFALVLDNVAV
NAWTMLSKMTADQLYSLVKNAPWGKGPVKIEFPTQKNQCANGTWVTQKMD
LALVDGQNLQELLQEAEGSKAKLGKDKTLAIDLLIHAALAWMPPLDKLKE
LKALQSDFTNFTTIQPVEDEFDNPNEDDEDQLRELRESHISENFDKRGGQ
SKRYTFWPLPLTPGGAGDIFTIQDFPLQAKSHSKVHVSNMWELNTIQRYQ
FLYSLVQDKFELASENLNEKVQEIQSALNKLEEIRSLKKVEILSRRKIIG
MTVSGASINSAILQQVRPKIIVVEEAAEVLEPHLIAAMNKDVDHLILIGD
HKQLRPQVESYPLVKKYGFTISLMERLINCGFPYKALPSPEPNATRVCRD
APGHLSKPENQP back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
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| GO:0006355 | regulation of transcription, DNA-templated |
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