Michael's list of missing or mis-annotated genes

This is an overview of potential missing and wrongly annotated genes in Genebuild EBI 6:

Geneid Locus Problem description Evidence Hyp. new annotation Best hit:

EMLSAG00000007422

 
LSalAtl2s422:283840..284599
Truncated at 3', missing conserved Chiting_binding_4 motiv, no blastp hit blastx of high coverage region (only expressed in parasitic copepods ) Putative cuticle protein Cuticle protein 7 [Lepeophtheirus salmonis]
EMLSAG00000006885
LSalAtl2s389:676780..677229
" " Putative cuticle protein Cuticle protein 7 [Lepeophtheirus salmonis]

Anna's IR genes, validated but missing from the annotation.

My number IR name Scaffold Coordinates RNA-seq RACE qPCR
1089 IR331 >LSalAtl2s487 340993 - 343729 yes yes  
3081 IR326 >LSalAtl2s238 314001 - 315575 yes yes  
3871 IR321 >LSalAtl2s70 277328 -  279239 yes    
4902 IR328 >LSalAtl2s260 1000711 - 1019273 yes yes yes
5712 IR329 >LSalAtl2s479 281409 - 283389 no yes  
6703 IR21a >LSalAtl2s126 340981 - 348364 yes    
10734 IR332 >LSalAtl2s614 230167 - 218221 yes yes yes
10896 IR324 >LSalAtl2s224 11422 - 13381 yes    
12854 IR327 >LSalAtl2s257 161659 - 165871 yes yes  
18182 IR333 >LSalAtl2s637 22200 - 32139 yes