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Update: The Ensembl gene models are now available both via LiceBase and the genome browse. In LiceBase, you can use the
link to search for them.
Blast against NR is still running. These results will be imported once finished. Another note will appear here, once this has been done.
The new genome build will be imported from Monday, september 23. This means also, that all the old annotations "maker-LSalAtlS2...." genes will be deleted.
To avoid confusion, I will take LiceBase off-line for the period of the initial delete and upload. RNAi data will not be affected by this procedure, also we have regular backups, so there is no need to be concerned.
The new gene models contain Ensembl stable ids for genes, proteins and trasncripts, also 5' and 3' UTRs are present. I have checked the annotations for exact duplicates, and there are none. There are no overlapping genes at all. The annotation is currently simplistic such that there is 1 gene <=> 1 trasncript <=> protein. We can later update the annotation with experimentally validated isoforms.
The 'final' genome build including Ensembl stable IDs has arrived, and will be imported soon. There is a little pre-processing of the GFF file to be done.
We will come with updates about the first complete gene-build soon.