EMLSAT00000003141, EMLSAT00000003141-698988 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000003141
Unique NameEMLSAT00000003141-698988
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s175supercontigLSalAtl2s175:511439..512507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000003141 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000003141EMLSAG00000003141-685907Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000013786EMLSAE00000013786-722714Lepeophtheirus salmonisexon
EMLSAE00000013787EMLSAE00000013787-722715Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto778283auto778283Lepeophtheirus salmonispolypeptide
EMLSAP00000003141EMLSAP00000003141Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000003141

>EMLSAP00000003141 ID=EMLSAP00000003141|Name=EMLSAP00000003141|organism=Lepeophtheirus salmonis|type=polypeptide|length=316bp
MKAAVKLPPHIIPIVNDISMESNIKSLKNAPFSNRRSFRLFSKLGKPWHN
SALFKKRRNRKKRKRYPFQSFTRAPVTPYPFVKASSIPLPSNKNVLAVGX
RFTNAPVLDMEERPVLTPDLVNKENDSGIQEVDDPLFYNQDLTFNSLDNS
DERKVCLCCPWDDIFLQNSRRRNTKAKISLDGVDCSNFSPLEIKFQIQEP
NDQIVKRDTNKIPSSESDYYILNEISKFSMQTPRHRHPTNTYESFSYLPR
APLNFIRKNHVPTWSLSKHDTNSFRPSFDPINYLKENQLRKAQLLAKHLL
RTAIQEEKTRPYGHYY
back to top

mRNA from alignment at LSalAtl2s175:511439..512507+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000003141-698988 ID=EMLSAT00000003141-698988|Name=EMLSAT00000003141|organism=Lepeophtheirus salmonis|type=mRNA|length=1069bp|location=Sequence derived from alignment at LSalAtl2s175:511439..512507+ (Lepeophtheirus salmonis)
GGAGCAGCTAATATAATAATGAAGGCAGCAGTAAAACTGCCCCCTCATAT
CATTCCAATCGTAAATGATATATCCATGGAGTCAAATATTAAAAGTAGAT
ATGTTCCTTTATGCTAATTAGTTAACTATTAAGAGTAGTAGTTTCTGGTT
TTTTTAGGTCTTAAGAATGCGCCTTTCTCAAATCGTCGGTCATTCAGGCT
TTTCTCTAAGTTAGGAAAACCATGGCACAATTCAGCCCTTTTCAAAAAAA
GACGAAATCGAAAGAAACGAAAAAGATATCCCTTTCAAAGCTTTACTCGT
GCTCCCGTAACTCCTTATCCTTTTGTCAAGGCTTCATCTATTCCTCTTCC
ATCAAATAAAAATGTTTTGGCTGTTGGGMATAGATTTACAAACGCTCCAG
TCTTGGATATGGAAGAACGTCCAGTTTTAACACCAGACTTAGTTAATAAA
GAAAATGATAGTGGAATTCAGGAAGTCGATGATCCACTGTTTTATAATCA
GGACCTCACATTCAATTCTTTGGATAATAGTGATGAAAGAAAGGTGTGTT
TATGTTGTCCATGGGATGACATTTTCCTACAAAATTCTAGGAGACGAAAT
ACAAAAGCAAAAATTTCTTTAGACGGAGTAGATTGTTCCAACTTTTCCCC
ACTTGAAATCAAATTTCAAATTCAAGAGCCAAACGATCAAATTGTGAAGC
GAGACACGAACAAAATACCCTCTTCAGAATCAGATTACTATATATTGAAT
GAAATATCCAAATTTTCAATGCAAACTCCTAGACATAGGCATCCGACAAA
CACTTATGAGAGTTTTTCGTACTTACCAAGAGCTCCACTCAATTTCATAA
GGAAAAATCATGTTCCTACCTGGTCATTGTCAAAACACGACACAAATTCA
TTTCGTCCAAGTTTTGATCCAATAAATTATCTTAAAGAAAATCAACTTCG
CAAGGCTCAGCTACTGGCAAAACATCTTCTCAGAACTGCAATTCAGGAAG
AAAAGACTAGACCATATGGACATTATTACTAGAAAATATCTACATTATAA
TATTTATTTCAAAGCGGGA
back to top
Add to Basket