cys-loop ligand-gated ion channel subunit, maker-scaffold697_size109876-snap-gene-0.22 (gene) Tigriopus kingsejongensis

Overview


Name	cys-loop ligand-gated ion channel subunit
Unique Name	maker-scaffold697_size109876-snap-gene-0.22
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000006968 (supercontig:LSalAtl2s:LSalAtl2s396:160743:177530:1 gene:EMLSAG00000006968 transcript:EMLSAT00000006968 description:"maker-LSalAtl2s396-augustus-gene-1.5")

HSP 1 Score: 349.747 bits (896), Expect = 8.814e-121
Identity = 169/233 (72.53%), Postives = 187/233 (80.26%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG--------------------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPK 201
            MDCYFRQYWR ERLSFTG+K N H   I+QLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMML+SFPMDWQ+CPLV+GS+AYT ++V Y W + +NAV YEG                                G +SVLQVVIALQRHTGYFLIQIYLPCTL+V+LSWVGFWLNREATSDR+GLGITTVLTLST++L+S+T LPK
Sbjct:    1 MDCYFRQYWRXERLSFTGLKNNTHHLKIDQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLKSFPMDWQSCPLVLGSYAYTIDQVYYRWQHSSNAVAYEGKLKLSQFDIITTAYRSLNFSRNTDDRYTLPLVGGFSVLQVVIALQRHTGYFLIQIYLPCTLIVVLSWVGFWLNREATSDRVGLGITTVLTLSTIALDSRTDLPK 233

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000004092 (supercontig:LSalAtl2s:LSalAtl2s217:422807:437258:1 gene:EMLSAG00000004092 transcript:EMLSAT00000004092 description:"augustus_masked-LSalAtl2s217-processed-gene-4.1")

HSP 1 Score: 192.971 bits (489), Expect = 9.925e-59
Identity = 110/260 (42.31%), Postives = 147/260 (56.54%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWS--------------------NPTNAVGYE---GGDY--SVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSD----RIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHY 231
            MDCYFRQYW D RL +       +S  +N+L +N + L KIW+PDT+  NG +SY+H +T PN+ +RIS  G I+YS RLT+KA+C M LR FP+D Q CPL IGSF +  +E+ Y W+                    N +    Y    GGD   SV+ +    QR TGY+L+QIY+P TL+V  SWV FWL +         R  LG T  L + T+    K S P+  YATALD FI+  F    A L+EFA +++
Sbjct:  125 MDCYFRQYWTDPRLVY-------NSSKLNELPMNWQXLTKIWRPDTFIINGKNSYLHKMTVPNRFIRISPDGRISYSQRLTVKARCEMDLRKFPLDSQHCPLEIGSFGHGVDEILYNWTSMPLSMDKKLGLAQYHLISWNNSAFTRYSRNAGGDQNVSVIALHFTFQRRTGYYLLQIYIPLTLIVCCSWVTFWLIKTEKGGEIPARTSLGGTXXLAIVTIGFGGK-SKPRVGYATALDVFIVLCFMTVFAALIEFAFINF 376

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000009047 (supercontig:LSalAtl2s:LSalAtl2s566:676793:679625:-1 gene:EMLSAG00000009047 transcript:EMLSAT00000009047 description:"maker-LSalAtl2s566-snap-gene-5.58")

HSP 1 Score: 185.652 bits (470), Expect = 4.367e-56
Identity = 100/257 (38.91%), Postives = 143/257 (55.64%), Query Frame = 0

Query:    4 YFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPT------------NAVGYEG---------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKVQNEI 239
            Y  QYW+DERLSF+       ++    L+L+    EKIW PDT+F N  +S++H +T  NK++R+   G ITY MR T    C M L  +P+D Q C + I S+ YT ++V   W                  VG+E          G Y  L +   LQR+ GYF+ Q YLP  L+V+LSWV FW+N EATS R+ LGITTVLT++T+S   ++SLP+  Y  A+D +++  F +  A LLE+A      + + +I
Sbjct:  130 YLNQYWKDERLSFS-------TEEDKVLTLSGDFSEKIWVPDTFFANDKNSFLHDVTEQNKMVRLHGDGAITYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWRQKPVVGVEDAQLPQFTIVGWETNERKIKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAASSSSKQPEEDI 379

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000004091 (supercontig:LSalAtl2s:LSalAtl2s217:408116:410199:1 gene:EMLSAG00000004091 transcript:EMLSAT00000004091 description:"maker-LSalAtl2s217-augustus-gene-4.34")

HSP 1 Score: 182.185 bits (461), Expect = 1.197e-54
Identity = 107/275 (38.91%), Postives = 145/275 (52.73%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPT----NAVGY---------------------EGGDY-----SVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSD----RIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKVQNEIRW 241
            MDCYFRQ W DERL +       ++  +  L+LN   L KIW PDT+  NG  S++H IT PN+ +R+S  G ++YS RLTI A C M L+ FP D Q CPL +GSF ++  ++ Y W  P     N +G                      E G+Y     SV++ V   +R +GYFL+QIY P TL+V  SWV FWL +         R  LG  +VL++  +    K   PK  YATALD FII  F    A L+EFA +++   +   I+W
Sbjct:  117 MDCYFRQSWVDERLKY-------NTSGVEVLALNWAFLAKIWVPDTFIINGKKSFLHKITVPNRFVRVSPTGKVSYSQRLTILANCIMNLKKFPFDTQICPLKLGSFGHSNKDLIYQWKKPKAVSFNKLGLAQFHLINYSSYNIIEPSLRLTEKGNYRNDSSSVMEFV--FERQSGYFLLQIYTPLTLIVFCSWVAFWLVKTEKGGEXPARTXLGANSVLSIVNIGFTGKDR-PKVGYATALDVFIILCFFTVFAALVEFACINF---IDTFIKW 378

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000003120 (supercontig:LSalAtl2s:LSalAtl2s1753:14457:18648:1 gene:EMLSAG00000003120 transcript:EMLSAT00000003120 description:"maker-LSalAtl2s1753-augustus-gene-0.11")

HSP 1 Score: 186.037 bits (471), Expect = 3.088e-54
Identity = 103/264 (39.02%), Postives = 144/264 (54.55%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVW-------------------------------SNPTNAVGYEGGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFT 233
            +D YFRQ W D+RLSF     NA S S+ +L LN ++L KIWKPDTYF NG  S +H IT PN+ LRIS  G +++S RLTI A+C M L+ FP D Q CPL IGS+ YT +EV Y W                               +N   A G+     S+  +  + +R  G+FL+QIY P  ++V+ SWV FW+ +     R+ LG+ + L+++ +    K   P   Y TALD FII  F     +L+E+A ++Y +
Sbjct:  531 VDAYFRQAWVDQRLSF-----NATS-SVTELPLNWQILNKIWKPDTYFINGKKSKMHKITVPNRFLRISPDGLVSFSQRLTIHAQCLMELKKFPFDSQECPLHIGSYGYTADEVLYDWKDNALEISTLAKATMTQFNLMKWISQAETSITNRKIAAGFRND--SIASINFSFKRQYGFFLLQIYTPMFIIVMCSWVAFWIVKTDAPSRVSLGVASSLSVTKIGFAGKGK-PNVEYPTALDIFIIICFMTVFLSLVEYALINYIS 785

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000010137 (supercontig:LSalAtl2s:LSalAtl2s66:38297:115963:1 gene:EMLSAG00000010137 transcript:EMLSAT00000010137 description:"snap_masked-LSalAtl2s66-processed-gene-1.3")

HSP 1 Score: 145.206 bits (365), Expect = 6.330e-42
Identity = 88/257 (34.24%), Postives = 128/257 (49.81%), Query Frame = 0

Query:    2 DCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGY-------------------------EGGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALD-WFIICSFGYCVATLLEFAGVHYF 232
            D Y RQ W D RLS   +K        N       +++ IWKP+ +F N   +    +T PN L+RI  +G+I Y +RL +K  C M L  +P+D Q C + I SF+ T  E+   W +PT+ +                             G+YS L     L R  G+ LIQ YLP  L+V +SWV FW++ +    R+ LG+ T+LT+S  S  S TS+P+T Y  A+D W  +C+  +  A L+EF  V+Y 
Sbjct:    6 DTYLRQKWSDSRLSHPDIKSPLDLAXPN-------LVKAIWKPEVFFPNAKEANFQFVTVPNVLIRIHPNGEILYILRLRLKFSCMMELSRYPLDTQICAMQISSFSKTTKELLLEW-DPTHELSVTVAKDLRMPQFEMTKITTNRCHETNHMGNYSCLVAEFHLHRSIGFHLIQSYLPSVLIVAISWVSFWMDVDCVPARVTLGVITLLTVS--SQVSGTSVPQTSYVKAIDVWMGVCT-AFVFAALVEFTLVNYL 251

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000011971 (supercontig:LSalAtl2s:LSalAtl2s84:948400:1079594:1 gene:EMLSAG00000011971 transcript:EMLSAT00000011971 description:"maker-LSalAtl2s84-augustus-gene-10.5")

HSP 1 Score: 146.362 bits (368), Expect = 8.206e-42
Identity = 82/227 (36.12%), Postives = 123/227 (54.19%), Query Frame = 0

Query:    5 FRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWS--NPTNAVG-----------YEG---------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALD 209
            FR+ W DERL +     + H   +  L+L      K+W PDT+F N   +  H I  PN  +RI  +G+I YS+R+++   CPM LR +P+D Q C L I S+ +  +++ Y+W   +P   V            Y+          G+YS L+V +  +R   Y+LI IY+PC +LVI+SWV FWL++ A   R+ LG+TT+LT+ST +      LP   Y  A+D
Sbjct:   67 FREQWNDERLRYYD---DTHGH-LKYLTLTDPT--KVWMPDTFFRNEKEARKHEIIVPNVYVRIFPNGEILYSIRISLTLACPMDLRLYPLDKQVCVLQIASYGWAKDDLIYLWKEKDPVQVVPGLHLPRFTLEQYKSAYCDVTTNTGEYSCLKVELIFKREFSYYLITIYVPCCMLVIVSWVSFWLDQNAIPARVSLGVTTLLTMSTQTSGINAQLPPVSYTKAID 287

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000000919 (supercontig:LSalAtl2s:LSalAtl2s115:697711:740183:1 gene:EMLSAG00000000919 transcript:EMLSAT00000000919 description:"maker-LSalAtl2s115-augustus-gene-7.11")

HSP 1 Score: 144.821 bits (364), Expect = 1.677e-40
Identity = 81/251 (32.27%), Postives = 129/251 (51.39%), Query Frame = 0

Query:    2 DCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSN--PTNA--------------------VGYEGGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVH 230
            D +F Q W+D RL       + +        L ++ LEKIW+PD++F N  S    T+T PN  + + +   I Y ++LT+   CPM  +++P D QTC L I S ++T +++ + W    P +                       Y  G ++ L+VV   +R  GY+L   Y+P  L+VI+SW+ FW+  EA   R+ LG+T++LTLST    S+ SLP   Y  A+D F+     +   +L+E+A V+
Sbjct:   45 DVFFAQSWKDNRLRLPDNMTSEYRL------LPIEWLEKIWRPDSFFKNAKSVTFQTMTIPNHYIWLWKDKTILYMVKLTLVLSCPMHFKNYPHDTQTCNLEIESISHTTDDLIFTWDKEMPLDVDKGIELPQLELISTKSDDCTTVYSTGQFTCLEVVFKFKRRLGYYLFHTYVPTCLIVIMSWISFWIKPEAVPARVTLGVTSLLTLSTQHANSQKSLPPVSYIKAIDVFMSGCTVFVFLSLMEYALVN 289

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000006195 (supercontig:LSalAtl2s:LSalAtl2s339:168354:194952:-1 gene:EMLSAG00000006195 transcript:EMLSAT00000006195 description:"maker-LSalAtl2s339-augustus-gene-2.20")

HSP 1 Score: 135.191 bits (339), Expect = 3.984e-37
Identity = 73/219 (33.33%), Postives = 119/219 (54.34%), Query Frame = 0

Query:   40 KIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVW--SNPTNAV-------GYE--------------GGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALD-WFIICSFGYCVATLLEFAGVHYFTK 234
            K+W  DT+F N      H I + N  +R+  +GD+ YS+R+++   C M L  FP+D QTC L + S+ +T N++ Y W  +NP   V       G++               G YS L+V I   R   ++++ IY+PC ++V++SW+ FW++ +A   R+ LGIT +L +ST      +SLP   Y  A+D W  +C   +  + LLE+A V+Y ++
Sbjct:  159 KVWMXDTFFXNEKIGRFHNILQDNLYVRVFPNGDVLYSIRVSLTCACSMHLALFPLDKQTCNLDVASYGWTMNDLIYQWKETNPVQMVANLSLPGGFKLDGFTNHNCDVKXATGSYSCLRVEITFARQLSFYVLTIYIPCFMIVLVSWMSFWIDHKAVPARVSLGITXLLAMSTTQASINSSLPPVAYTKAIDVWCGVC-VTFVFSALLEYALVNYASR 376

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BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Match: EMLSAG00000000070 (supercontig:LSalAtl2s:LSalAtl2s100:516339:598693:-1 gene:EMLSAG00000000070 transcript:EMLSAT00000000070 description:"maker-LSalAtl2s100-snap-gene-5.24")

HSP 1 Score: 115.546 bits (288), Expect = 2.535e-31
Identity = 65/213 (30.52%), Postives = 105/213 (49.30%), Query Frame = 0

Query:    2 DCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVW----------------------SNPTNAVG--YEGGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLST 190
            D +F Q W+D RL         +        L V+ L  IW+PD++F N       T+T PN  L + +   I Y ++LT+   CPM   ++P D Q C L +   ++T +++ ++W                      SN T      Y  G+++ L+V+   +R  GY+L   Y+P  L+V++SW+ FW+  EA   R+ LG+T++LTLST
Sbjct:   19 DVFFAQEWKDHRLILPDNMTREYRL------LPVEWLHLIWRPDSFFKNAKKVTFQTMTIPNHYLWLYKDKTILYMVKLTLLLSCPMNFENYPHDEQNCKLSM-EMSHTTDDLIFIWLPEDKTPLAVDNGIQLPQLELVSNDTGDCTSVYSTGNFTCLEVIFKFRRRLGYYLFHTYIPTCLIVMMSWISFWIKPEAXXARVTLGVTSLLTLST 224

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|341941084|sp|P16305.3|GBRA6_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor)

HSP 1 Score: 238.81 bits (608), Expect = 1.596e-75
Identity = 118/263 (44.87%), Postives = 153/263 (58.17%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSN-------------------------PTNAVGYEGGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKVQNE 238
            MD +FRQ W DERL F G  +         LSLN  M+ KIW PDT+F NG  S  H +T PNKL R+ ++G I Y+MRLTI A CPM L +FPMD   CPL  GS+AY   E+ Y W                            +  +    G+Y ++ V   LQR  GYF+IQIY PC + VILS V FW+N+E+   R   GITTVLT++TLS+ ++ SLPK  YATA+DWFI   F +  + L+EFA V+YFT +Q++
Sbjct:   79 MDVFFRQTWTDERLKFKGPAE--------ILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKTEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQSQ 333

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|126302548|sp|Q16445.2|GBRA6_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor)

HSP 1 Score: 238.424 bits (607), Expect = 1.778e-75
Identity = 119/263 (45.25%), Postives = 152/263 (57.79%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSN-------------------------PTNAVGYEGGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKVQNE 238
            MD +FRQ W DERL F G            LSLN  M+ KIW PDT+F NG  S  H +T PNKL RI ++G I Y+MRLTI A CPM L +FPMD   CPL  GS+AY  +E+ Y W                            +  +    G+Y ++ V   LQR  GYF+IQIY PC + VILS V FW+N+E+   R   GITTVLT++TLS+ ++ SLPK  YATA+DWFI   F +  + L+EFA V+YFT +Q +
Sbjct:   79 MDVFFRQTWTDERLKFGG--------PTEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQTQ 333

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|232127|sp|P30191.1|GBRA6_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor)

HSP 1 Score: 238.039 bits (606), Expect = 2.565e-75
Identity = 118/263 (44.87%), Postives = 153/263 (58.17%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSN-------------------------PTNAVGYEGGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKVQNE 238
            MD +FRQ W DERL F G  +         LSLN  M+ KIW PDT+F NG  S  H +T PNKL R+  +G I Y+MRLTI A CPM L +FPMD   CPL  GS+AY  +E+ Y W                            +  +    G+Y ++ V   LQR  GYF+IQIY PC + VILS V FW+N+E+   R   GITTVLT++TLS+ ++ SLPK  YATA+DWFI   F +  + L+EFA V+YFT +Q++
Sbjct:   79 MDVFFRQTWTDERLKFKGPAE--------ILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMHNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQSQ 333

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|3023835|sp|Q90845.1|GBRA6_CHICK (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor)

HSP 1 Score: 236.498 bits (602), Expect = 1.374e-74
Identity = 118/263 (44.87%), Postives = 152/263 (57.79%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSN-------------------------PTNAVGYEGGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKVQNE 238
            MD +FRQ W DERL F G  +         L LN  M+ KIW PDT+F NG  S  H +T PNKL RI ++G I Y+MRLTI A CPM L +FPMD   CPL  GS+AY  +E+ Y W                            +  +    G+Y ++ V   LQR  GYF+IQIY PC + VILS V FW+N+E+   R   GITTVLT++TLS+ ++ SLPK  YATA+DWFI   F +  + L+EFA V+YFT +Q +
Sbjct:   79 MDVFFRQTWTDERLKFGGPTE--------ILRLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLHSVEVPQESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQTQ 333

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|120758|sp|P23576.1|GBRA2_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-2; AltName: Full=GABA(A) receptor subunit alpha-2; Flags: Precursor)

HSP 1 Score: 234.187 bits (596), Expect = 8.239e-74
Identity = 124/259 (47.88%), Postives = 164/259 (63.32%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWS-NPTNAV-------------------GYEG-----GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTK 234
            +D +FRQ W+DERL F G         +N L LN  M  KIW PDT+FHNG  S  H +T PNKLLRI + G + Y+MRLT++A+CPM L  FPMD  +CPL  GS+AYT +EV+Y+W+ NP+++V                   G E      G+Y+V+     L+R  GYF+IQ YLPC + VILS V FWLNRE+   R   G+TTVLT++TLS+ ++ SLPK  YATA+DWFI   + +  + L+EFA V+YFTK
Sbjct:   89 IDVFFRQKWKDERLKFKG--------PMNILRLNNSMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNPSDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTK 339

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|120756|sp|P10063.1|GBRA2_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-2; AltName: Full=GABA(A) receptor subunit alpha-2; Flags: Precursor)

HSP 1 Score: 232.646 bits (592), Expect = 3.719e-73
Identity = 122/259 (47.10%), Postives = 161/259 (62.16%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSN--------------------PTNAVGYEG-----GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTK 234
            +D +FRQ W+DERL F G         +N L LN  M  KIW PDT+FHNG  S  H +T PNKLLRI + G + Y+MRLT++A+CPM L  FPMD  +CPL  GS+AYT +EV+Y+W+                     P  ++G E      G+Y+V+     L+R  GYF+IQ YLPC + VILS V FWLNRE+   R   G+TTVLT++TLS+ ++ SLPK  YATA+DWFI   + +  + L+EFA V+YFTK
Sbjct:   89 IDVFFRQKWKDERLKFKG--------PMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLPGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTK 339

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|143811394|sp|P20237.2|GBRA4_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor)

HSP 1 Score: 234.187 bits (596), Expect = 9.136e-73
Identity = 119/263 (45.25%), Postives = 153/263 (58.17%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSN-PTNAVGYEG------------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKVQNE 238
            MD +FRQ W D+RL + G         I  L LN  M+ K+W PDT+F NG  S  H +T PNKL RI  +G I Y+MRLTI A+CPM L  FPMD   CPL  GS+AY  +E+ Y W+  P  +V                            G+Y V+ V   L+R  GYF+IQ Y+PC + VILS V FW+N+E+   R   GITTVLT++TLS+ ++ SLPK  YATA+DWFI   F +  + L+EFA V+YFT VQ E
Sbjct:   95 MDVFFRQTWIDKRLKYDG--------PIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNVQME 349

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|206729865|sp|P48169.2|GBRA4_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor)

HSP 1 Score: 233.802 bits (595), Expect = 1.539e-72
Identity = 118/263 (44.87%), Postives = 153/263 (58.17%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSN-PTNAVGYEG------------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKVQNE 238
            MD +FRQ W D+RL + G         I  L LN  M+ K+W PDT+F NG  S  H +T PNKL RI  +G I Y+MRLTI A+CPM L  FPMD   CPL  GS+AY  +E+ Y W+  P  +V                            G+Y V+ V   L+R  GYF+IQ Y+PC + VILS V FW+N+E+   R   GITTVLT++TLS+ ++ SLPK  YATA+DWFI   F +  + L+EFA V+YFT +Q E
Sbjct:   95 MDVFFRQTWIDKRLKYDG--------PIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNIQME 349

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|209572895|sp|Q5RCC5.2|GBRA2_PONAB (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-2; AltName: Full=GABA(A) receptor subunit alpha-2; Flags: Precursor)

HSP 1 Score: 230.72 bits (587), Expect = 2.081e-72
Identity = 123/259 (47.49%), Postives = 163/259 (62.93%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWS-NPTNAV-------------------GYEG-----GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTK 234
            +D +FRQ W+DERL F G         +N L LN  M  KIW PDT+FHNG  S  H +T PNKLLRI + G + Y+MRLT++A+CPM L  FPMD  +CPL  GS+AYT +EV+Y+W+ N +++V                   G E      G+Y+V+     L+R  GYF+IQ YLPC + VILS V FWLNRE+   R   G+TTVLT++TLS+ ++ SLPK  YATA+DWFI   + +  + L+EFA V+YFTK
Sbjct:   89 IDVFFRQKWKDERLKFKG--------PMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTK 339

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Match: gi|126302547|sp|P47869.2|GBRA2_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-2; AltName: Full=GABA(A) receptor subunit alpha-2; Flags: Precursor)

HSP 1 Score: 230.72 bits (587), Expect = 2.149e-72
Identity = 123/259 (47.49%), Postives = 163/259 (62.93%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWS-NPTNAV-------------------GYEG-----GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTK 234
            +D +FRQ W+DERL F G         +N L LN  M  KIW PDT+FHNG  S  H +T PNKLLRI + G + Y+MRLT++A+CPM L  FPMD  +CPL  GS+AYT +EV+Y+W+ N +++V                   G E      G+Y+V+     L+R  GYF+IQ YLPC + VILS V FWLNRE+   R   G+TTVLT++TLS+ ++ SLPK  YATA+DWFI   + +  + L+EFA V+YFTK
Sbjct:   89 IDVFFRQKWKDERLKFKG--------PMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTK 339

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|1325275201|ref|XP_023322271.1| (gamma-aminobutyric acid receptor alpha-like [Eurytemora affinis])

HSP 1 Score: 405.601 bits (1041), Expect = 9.259e-137
Identity = 191/259 (73.75%), Postives = 213/259 (82.24%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG------------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKV 235
            MDCYFRQYW D RLSF G++ N+++  INQLSLNVKMLEKIWKPDTYF NGL+SY+HTITRPNKLLRISEHG ITYSMRLTIKAKCPMML SFPMDWQ+CPL++GSFAY  NEV Y W +P+  VGYEG                        G YSVLQVV  LQRHTGYFLIQ+Y+PCTL+VILSWVGFWLNREATSDR+GLGIT VLTLST++L+S+T LPK HYATALDWFIICSFGYC+ATLLEFAGVHYFTK+
Sbjct:  102 MDCYFRQYWTDTRLSFKGLQSNSNNLEINQLSLNVKMLEKIWKPDTYFLNGLNSYLHTITRPNKLLRISEHGFITYSMRLTIKAKCPMMLSSFPMDWQSCPLILGSFAYPVNEVQYKWQDPSAGVGYEGELHLSQFDIKETEYRNVNYTRKGSGTYSVLQVVFLLQRHTGYFLIQVYVPCTLIVILSWVGFWLNREATSDRVGLGITAVLTLSTIALDSRTDLPKVHYATALDWFIICSFGYCMATLLEFAGVHYFTKI 360

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|1325286903|ref|XP_023328188.1| (gamma-aminobutyric acid receptor alpha-like [Eurytemora affinis])

HSP 1 Score: 404.06 bits (1037), Expect = 1.465e-135
Identity = 192/260 (73.85%), Postives = 212/260 (81.54%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG-------------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKV 235
            MDCYFRQYWRDERL F G+K NA+   I+QLSLNVKMLEKIWKPDTYFHNGL SY+HTITRPNKLLRISEHGDITYSMRLTIKAKCPM+LR+FPMD Q+CPLV+GSFAYT +EV Y W +  + VGYEG                         G YSVLQVV  LQRHTGYFLIQ+Y+PCTL+VILSWVGFWLNREATSDR+ LGIT VLTLS ++L+S+T LPK HYATALDWFIICSFGYC+ATLLEFAGVHYFTKV
Sbjct:  137 MDCYFRQYWRDERLGFRGLKHNANQLQIDQLSLNVKMLEKIWKPDTYFHNGLDSYLHTITRPNKLLRISEHGDITYSMRLTIKAKCPMLLRNFPMDHQSCPLVLGSFAYTADEVEYKWKS-GDPVGYEGELQLSQFDITKTLFRSLNYTRSESIGTYSVLQVVFLLQRHTGYFLIQVYVPCTLIVILSWVGFWLNREATSDRVTLGITAVLTLSAIALDSRTDLPKVHYATALDWFIICSFGYCMATLLEFAGVHYFTKV 395

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|1153703468|ref|XP_020292139.1| (gamma-aminobutyric acid receptor alpha-like [Pseudomyrmex gracilis])

HSP 1 Score: 340.502 bits (872), Expect = 1.019e-113
Identity = 166/261 (63.60%), Postives = 195/261 (74.71%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWS--------------------NPTNAVGY--EGGDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKVQNEI 239
            MDCYFRQ WRD RLSF        S  I  LSL++KMLE+IW+PDTYF+NG  SY+HTIT PNKLLRIS+HGDI YSMRLTIKAKCPM LR+FPMD Q CPL+IGS+AYT  ++ Y W                     +P   + Y    G++SVLQV   LQRHTGYFLIQ+Y+PC L+V+LSWV FW++REATSDR+GLGITTVLTLST+SL+S+T LPK  YATALDWF++ SFGYC+ATLLEFAGVHYFTKV   I
Sbjct:  108 MDCYFRQSWRDSRLSFLD-----PSPGIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQFCPLIIGSYAYTSGQLIYEWQEGLSVNFVPGMALSQFDLMGSPYRNLTYVRREGEFSVLQVSFNLQRHTGYFLIQVYVPCVLIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCIATLLEFAGVHYFTKVTTVI 363

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|1229705581|ref|XP_022114502.1| (gamma-aminobutyric acid receptor alpha-like [Pieris rapae])

HSP 1 Score: 344.354 bits (882), Expect = 5.506e-113
Identity = 164/257 (63.81%), Postives = 194/257 (75.49%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG----------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKV 235
            MDCYFRQYWRD RLSF G         I  LSL++KMLE+IW+PDTYF+NG  SY+HTIT PNKLLRIS+HGDI YSMRLTIKAKCPM LR+FPMD Q+CPL++GS+AY+  ++ Y W N  +     G                      GD+SVLQV   LQRHTGYFLIQ+Y+PC L+V+LSWV FW++REATSDR+GLGITTVLTLST+SL+S+T LPK  YATALDWF++ SF YC+ATLLEFAGVHYFTKV
Sbjct:  157 MDCYFRQYWRDTRLSFLG--------PIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSESVNFVPGMTLSQFDLISFPYRNFTFTRREGDFSVLQVSFNLQRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKV 405

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|1133426351|ref|XP_019868992.1| (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyric acid receptor alpha-like [Aethina tumida])

HSP 1 Score: 343.199 bits (879), Expect = 6.973e-113
Identity = 164/257 (63.81%), Postives = 195/257 (75.88%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG----------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKV 235
            MDCYFRQYWRD+RLSF G         I  LSL++KMLE+IW+PDTYF+NG +SY+HTIT PNKLLRIS+ GDI YSMRLTIKAKCPM L+SFPMD Q+CPL++GS+AYT  ++ Y W N  +     G                      GD+SVLQV   LQRHTGYFLIQ+Y+PC L+V+LSWV FW++REATSDR+GLGITTVLTLST+SL+S+T LPK  YATALDWF++ SF YC+ATLLEFAGVHYFTKV
Sbjct:   89 MDCYFRQYWRDQRLSFLG--------PIKSLSLSIKMLERIWRPDTYFYNGKNSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELKSFPMDRQSCPLILGSYAYTSKDLVYQWQNEASVNFVPGMTLSQFDLMSFPYRNFTFTRREGDFSVLQVSFNLQRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKV 337

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|1004401004|gb|KYB28119.1| (cys-loop ligand-gated ion channel subunit [Tribolium castaneum])

HSP 1 Score: 343.199 bits (879), Expect = 9.152e-113
Identity = 164/257 (63.81%), Postives = 194/257 (75.49%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG----------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKV 235
            MDCYFRQYWRD+RLSF G         I  LSL++KMLE+IW+PDTYF+NG  SY+HTIT PNKLLRIS+ GDI YSMRLTIKAKCPM LR+FPMD Q+CPL++GS+AYT  ++ Y W N  +     G                      GD+SVLQV   LQRHTGYFLIQ+Y+PC L+V+LSWV FW++REATSDR+GLGITTVLTLST+SL+S+T LPK  YATALDWF++ SF YC+ATLLEFAGVHYFTKV
Sbjct:  127 MDCYFRQYWRDQRLSFLG--------PIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRTFPMDRQSCPLILGSYAYTSKDLLYRWQNEASVNFVPGMTLSQFDLISFPYRNFTLKRREGDFSVLQVSFNLQRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKV 375

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|1344814082|ref|XP_023950076.1| (gamma-aminobutyric acid receptor alpha-like isoform X2 [Bicyclus anynana])

HSP 1 Score: 343.199 bits (879), Expect = 1.483e-112
Identity = 164/257 (63.81%), Postives = 194/257 (75.49%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG----------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKV 235
            MDCYFRQYWRD RLSF G         I  LSL++KMLE+IW+PDTYF+NG  SY+HTIT PNKLLRIS+HGDI YSMRLTIKAKCPM LR+FPMD Q+CPL++GS+AY+  ++ Y W N  +     G                      GD+SVLQV   LQRHTGYFLIQ+Y+PC L+V+LSWV FW++REATSDR+GLGITTVLTLST+SL+S+T LPK  YATALDWF++ SF YC+ATLLEFAGVHYFTKV
Sbjct:  151 MDCYFRQYWRDTRLSFLG--------PIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLISFPYRNFTFTRREGDFSVLQVSFNLQRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKV 399

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|1344814080|ref|XP_023950075.1| (gamma-aminobutyric acid receptor alpha-like isoform X1 [Bicyclus anynana])

HSP 1 Score: 343.199 bits (879), Expect = 1.629e-112
Identity = 164/257 (63.81%), Postives = 194/257 (75.49%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG----------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKV 235
            MDCYFRQYWRD RLSF G         I  LSL++KMLE+IW+PDTYF+NG  SY+HTIT PNKLLRIS+HGDI YSMRLTIKAKCPM LR+FPMD Q+CPL++GS+AY+  ++ Y W N  +     G                      GD+SVLQV   LQRHTGYFLIQ+Y+PC L+V+LSWV FW++REATSDR+GLGITTVLTLST+SL+S+T LPK  YATALDWF++ SF YC+ATLLEFAGVHYFTKV
Sbjct:  158 MDCYFRQYWRDTRLSFLG--------PIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLISFPYRNFTFTRREGDFSVLQVSFNLQRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKV 406

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|1274129788|ref|XP_022829418.1| (gamma-aminobutyric acid receptor alpha-like [Spodoptera litura])

HSP 1 Score: 343.199 bits (879), Expect = 1.992e-112
Identity = 163/257 (63.42%), Postives = 194/257 (75.49%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG----------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKV 235
            MDCYFRQYWRD RLSF G         I  LSL++KMLE+IW+PDTYF+NG  SY+HTIT PNKLLRIS+HGDI YSMRLTIKAKCPM LR+FPMD Q+CPL++GS+AY+  ++ Y W N  +     G                      G++SVLQV   LQRHTGYFLIQ+Y+PC L+V+LSWV FW++REATSDR+GLGITTVLTLST+SL+S+T LPK  YATALDWF++ SF YC+ATLLEFAGVHYFTKV
Sbjct:  159 MDCYFRQYWRDTRLSFLG--------PIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLISFPYRNFTFTRREGEFSVLQVSFNLQRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKV 407

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Match: gi|913309770|ref|XP_013185486.1| (PREDICTED: gamma-aminobutyric acid receptor alpha-like [Amyelois transitella])

HSP 1 Score: 343.584 bits (880), Expect = 2.450e-112
Identity = 164/257 (63.81%), Postives = 194/257 (75.49%), Query Frame = 0

Query:    1 MDCYFRQYWRDERLSFTGVKKNAHSQSINQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLRSFPMDWQTCPLVIGSFAYTGNEVSYVWSNPTNAVGYEG----------------------GDYSVLQVVIALQRHTGYFLIQIYLPCTLLVILSWVGFWLNREATSDRIGLGITTVLTLSTLSLESKTSLPKTHYATALDWFIICSFGYCVATLLEFAGVHYFTKV 235
            MDCYFRQYWRD RLSF G         I  LSL++KMLE+IW+PDTYF+NG  SY+HTIT PNKLLRIS+HGDI YSMRLTIKAKCPM LR+FPMD Q+CPL++GS+AY+  ++ Y W N  +     G                      GD+SVLQV   LQRHTGYFLIQ+Y+PC L+V+LSWV FW++REATSDR+GLGITTVLTLST+SL+S+T LPK  YATALDWF++ SF YC+ATLLEFAGVHYFTKV
Sbjct:  174 MDCYFRQYWRDARLSFLG--------PIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSESVNFVPGMTLSQFDLISYPYRNFTFTRREGDFSVLQVSFNLQRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKV 422

The following BLAST results are available for this feature:

BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
BLAST of cys-loop ligand-gated ion channel subunit vs. nr

BLAST of cys-loop ligand-gated ion channel subunit vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000006968	8.814e-121	72.53	supercontig:LSalAtl2s:LSalAtl2s396:160743:177530:1...	[more]
EMLSAG00000004092	9.925e-59	42.31	supercontig:LSalAtl2s:LSalAtl2s217:422807:437258:1...	[more]
EMLSAG00000009047	4.367e-56	38.91	supercontig:LSalAtl2s:LSalAtl2s566:676793:679625:-...	[more]
EMLSAG00000004091	1.197e-54	38.91	supercontig:LSalAtl2s:LSalAtl2s217:408116:410199:1...	[more]
EMLSAG00000003120	3.088e-54	39.02	supercontig:LSalAtl2s:LSalAtl2s1753:14457:18648:1 ...	[more]
EMLSAG00000010137	6.330e-42	34.24	supercontig:LSalAtl2s:LSalAtl2s66:38297:115963:1 g...	[more]
EMLSAG00000011971	8.206e-42	36.12	supercontig:LSalAtl2s:LSalAtl2s84:948400:1079594:1...	[more]
EMLSAG00000000919	1.677e-40	32.27	supercontig:LSalAtl2s:LSalAtl2s115:697711:740183:1...	[more]
EMLSAG00000006195	3.984e-37	33.33	supercontig:LSalAtl2s:LSalAtl2s339:168354:194952:-...	[more]
EMLSAG00000000070	2.535e-31	30.52	supercontig:LSalAtl2s:LSalAtl2s100:516339:598693:-...	[more]

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BLAST of cys-loop ligand-gated ion channel subunit vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|341941084\|sp\|P16305.3\|GBRA6_MOUSE	1.596e-75	44.87	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|126302548\|sp\|Q16445.2\|GBRA6_HUMAN	1.778e-75	45.25	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|232127\|sp\|P30191.1\|GBRA6_RAT	2.565e-75	44.87	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|3023835\|sp\|Q90845.1\|GBRA6_CHICK	1.374e-74	44.87	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|120758\|sp\|P23576.1\|GBRA2_RAT	8.239e-74	47.88	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|120756\|sp\|P10063.1\|GBRA2_BOVIN	3.719e-73	47.10	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|143811394\|sp\|P20237.2\|GBRA4_BOVIN	9.136e-73	45.25	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|206729865\|sp\|P48169.2\|GBRA4_HUMAN	1.539e-72	44.87	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|209572895\|sp\|Q5RCC5.2\|GBRA2_PONAB	2.081e-72	47.49	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]
gi\|126302547\|sp\|P47869.2\|GBRA2_HUMAN	2.149e-72	47.49	RecName: Full=Gamma-aminobutyric acid receptor sub...	[more]

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BLAST of cys-loop ligand-gated ion channel subunit vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1325275201\|ref\|XP_023322271.1\|	9.259e-137	73.75	gamma-aminobutyric acid receptor alpha-like [Euryt...	[more]
gi\|1325286903\|ref\|XP_023328188.1\|	1.465e-135	73.85	gamma-aminobutyric acid receptor alpha-like [Euryt...	[more]
gi\|1153703468\|ref\|XP_020292139.1\|	1.019e-113	63.60	gamma-aminobutyric acid receptor alpha-like [Pseud...	[more]
gi\|1229705581\|ref\|XP_022114502.1\|	5.506e-113	63.81	gamma-aminobutyric acid receptor alpha-like [Pieri...	[more]
gi\|1133426351\|ref\|XP_019868992.1\|	6.973e-113	63.81	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyric...	[more]
gi\|1004401004\|gb\|KYB28119.1\|	9.152e-113	63.81	cys-loop ligand-gated ion channel subunit [Triboli...	[more]
gi\|1344814082\|ref\|XP_023950076.1\|	1.483e-112	63.81	gamma-aminobutyric acid receptor alpha-like isofor...	[more]
gi\|1344814080\|ref\|XP_023950075.1\|	1.629e-112	63.81	gamma-aminobutyric acid receptor alpha-like isofor...	[more]
gi\|1274129788\|ref\|XP_022829418.1\|	1.992e-112	63.42	gamma-aminobutyric acid receptor alpha-like [Spodo...	[more]
gi\|913309770\|ref\|XP_013185486.1\|	2.450e-112	63.81	PREDICTED: gamma-aminobutyric acid receptor alpha-...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold697_size109876	supercontig	scaffold697_size109876:81251..87647 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	P:transmembrane transport

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold697_size109876-snap-gene-0.22-mRNA-1	maker-scaffold697_size109876-snap-gene-0.22-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold697_size109876:81251..87647+

gene from alignment at scaffold697_size109876:81251..87647+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold697_size109876-snap-gene-0.22 ID=maker-scaffold697_size109876-snap-gene-0.22|Name=cys-loop ligand-gated ion channel subunit|organism=Tigriopus kingsejongensis|type=gene|length=6397bp|location=Sequence derived from alignment at scaffold697_size109876:81251..87647+ (Tigriopus kingsejongensis)
AACTACTCGATGGATTGTTATTTCCGTCAATATTGGAGAGACGAGCGCCT
TAGTTTTACCGGGGTGAAGAAAAACGCCCACTCTCAATCCATTAATCAGC
TCAGTCTTAACGTCAAGATGTTGGAGAAAATATGGAAGCCAGATACGTAT
TTTCACAATGGTCTCAGCTCCTATATCCACACTATAACTCGACCCAACAA
GCTATTGCGAATTTCTGAACATGGTGACATCACTTACTCAATGCGGTAGG
GGCAATACGTTTTGGGGTACTATTGGTTATAAGGAATAGCCATTGATGGA
TTGTCAAGCCAAAGCCGCCGCATCGGAAATTGATATTTGTCCTTACTTAC
AGTCTGACCATCAAAGCCAAGTGTCCAATGATGTTACGTAGTTTTCCCAT
GGATTGGCAGACTTGTCCACTTGTCATTGGAAGTTGTAAGTATACCCTTT
AGTTGAATCGAAATTATGTGGGAATTAATATGTATATGTAAGGTCTGTTG
ATCTTCTAGACACCGGTGATTGTGACCTAAGCTACTTTCACTCAGTGAAA
TCAGGGCAAGTGGCTGGTCAAAGTTGTCGCTTGATGTGCGGTTATGCGGA
GGAATCCCCCTGTCATCTAGCGACAGTTTGCCCTAACGCCTGCCGTTTGT
GGGCTAGGACCCACGATGGCACCAACATATCCTTGCACTGGAACCCGCAG
GTTTTTTCTGTCCCTTTTCGGTCAAACCCTGGCTACCTTGGACTCGGTCC
AAGGATTAGAATACATTTTCAGAAAGTCAGTAGGTCGAATACGTAGGTCA
AACTCTTCGGAGACCTCTAATTGGGAATTAGTTGCACTCTACTGATGATT
CCTGGGGCCTTATAAACAAACAAAGAATATGTATTAAATCCAAGACAAGA
CTCCATTAGCCATATGGGATTTGGCAGGGAAATTCAAGCGTTTGGTTGAG
ATCATGATCCCAGTTGAGGAGATTTTCAAGCCAAAGATCGGTTGGAGTAC
GTACATGCATTACCGCAGGAAAGCTGGTTCGTGCATTATTGCTGTCTAAC
AAGAAGTCATTTAGGGCCTACAGTAACTGTCCAACGCTTTTGAGTCAAGA
ACAGGATGTGAATGCTAGTACCCTGAGAGGAATGCAAATCGGGCATATAC
CGTAAATGAACCACTTGCGTTGAAGGAGCTAGAGCGCTCTTCTGTGCCCA
GGGTTGCCAGCTTGAAAAAAGTTACTGTCGCCATTTCGACCCTAGAATAT
CGCCAATCGTCTCCAATCAAAAAAAAACATTTCCCCGAAATTCACTTCTT
GGCATTTTTTCGCTCTTTGTCAGCGTTTTCTGGATTTTTTTGTGGGAAAA
GTGCGAAAACGAAGTAATTGCATTTCCTTATCTGTTGAAGGAACTCATAC
AGTATGTTGATTTATTTAACTATTTGCGATTTCTACCATTTTTTCGAGGT
TTTGTACCTTAAAAAGGAAAAACTTTGAAGTAAAACATCACTTTTTCACA
TTTATATGACATTTCCTGCTTTTCACTCCATTTTTCTGCGCTGTTTCCAC
CTAAATACCGAGGGAAGCGGCGTGGCCGAGTGGTTAGAGTGGTGCTCTCA
GAGTACACCTATCACTCGCCTGCCATGCGTCTGGGGTTCGATCCCCAGCG
AAACTAGTTGGACCTAGCTTCCTTAGCTCAGAGCCTCTTGGGGATCTCTA
ACTGGTTACCGAGTGCAAACCGCGGGCTATTATGTCCCTGCTGGTTCCAA
GTGAATACCGTGGAGCTCCTCATATTGGTGCTGCTGGTTCCGCGTGCAAC
CGCCGCCAAACTCCCATGAGCGCCCTCTGCAGGTTACCGAGTGCAACCGC
AGCGGCAAATAGCCCCTGCTGGTTACCGAGCGCAAACCGTGGAGGTCACA
ATGTGGGCTGCCTTTGCAGGCGAAACTGAGTGAACCTGTGGTCATTCCTC
GAGGGTGAGGTAACAATTCATAAATACGGTCATACTAAGTCTCGTCAGAG
ATGTCATTTCCGGACAGAAATGTCCGGGGCCAGCACAACCAACCAACCAA
ACCACCTAAATACCCTTTTCTACACCCTACTTATTACCGACTCCTTGAGC
AAGCAATCTCTAAGCTAATGTTGTACGTCCAGAAGGTCAGATGGCAATGA
AGCAGAGTAATGGAATCTTTAGTTGCCTTCAGTGCCATGCTGAATTAAAC
GAGCTAATTTTAAAGATTAGAGACTGGATCTGAAAGCTTTTTACAAGAAC
CATACGTTTTAACTTTTTAAACCAGGTAAGATAAAAATATCTGTTCCGCT
TATATTGGAAGAAAATCCATTTTGGGTGAGGTCTTGGGNCATTTAGGGCC
TACAGTAACTGTCCAACGCTTTTGAGTCAAGAACAGGATGTGAATGCTAG
TACCCTGAGAGGAATGCAAATCGGGCATATACCGTAAATGAACCACTTGC
GTTGAAGGAGCTAGAGCGCTCTTCTGTGCCCAGGGTTGCCAGCTTGAAAA
AAGTTACTGTCGCCATTTCGACCCTAGAATATCGCCAATCGTCTCCAATC
AAAAAAAACATTTCCCCGAAATTCACTTCTTGGCATTTTTTCGCTCTTTG
TCAGCGTTTCAGGATTTTTTTGTGGGAAAACGAAGTAATTGCATTTCCTT
ATCTGTTGAAGGAACTCATACAGTATGTTGATTTATTTAACTATTTGCGA
TTTCTACAATTTTTTCGAGGTTTTGTACCTTAAAAAGGAAAAACTTTGAA
GTAAAACATCACTTTTTCACATTTATATGACATTTCCTGCTTTTCACTCC
ATTTTTCTGCGCTGTTTCCACCTAAATACCCTTTTCTACACCCTACTTAT
TACCGACTCCTTGAGCAAGCAATCTCTAAGCTAATGTTGTACGTCCAGAA
GGTCAGATGGCAATGAAGCAGAGTAATGGAATCTTTAGTTGCCTTCAGTG
CCATGCTGAATTAAACGAGCTAATTTTAAAGATTAGAGACTGGATCTGAA
AGCTTTTTACAAGAACCATACGTTTTAACTTTTTAAACCAGGTAAGATAA
AAATATCTGTTCCGCTTATATTGGAAGAAAATCCATTTTGGGTGAGGTCT
TGGGTGCTCATGTCTGGTCTGCTCACAATTTTCCCTGAAAGGTTTTCGTG
AAAAAGGCGCACATTCACAAGACCAATCGTCATGGCCTAGAGTTTTCGTT
TTGTAGTCACGTTTTAAACATGTTGAGGCTAAAATAATCCCCCTTACAGT
ATAAGGGCAATTGTTAATTAATAATTTATAAGCGAGGAACAAAGCGATCG
TTTTACAAATGTCTTTGTACTAAATTTGTGTTCCATATCCACCGTTTTTT
CATCTTTCGGAAAAAAGCTCGAAAATCACATTGGTTTTTGCCATCGGAAA
TAGTATCGAAAATCACCAAATGGGCGATATATGTATTGCCAAACCTGGCA
ACCCTATTGCCATTGCTTGTGGCGTAAAAGGCGCAATATTTCGTTCAAAA
GTTTGCCTCCCACGGTGTTCCAGATGGAAACCGAGCCACACTCATATTGG
TGAATTGTGACCTGCTTTCGATTTCACAAACCCTTTCAGTCACCGGACAC
CTAGACGCATTATGTTTAGCATGAAATGCCGCACTGATTTGTTTTCCCAA
GAAGGATATCACAGATACGATAGTAGATATCAAATTATATTCACCACTTG
GCCCGAAATGAGGGGTCCAGTGTCTCCAATACTCTGAATTGCACTAACCA
CGGAATTCAATGAGGGTGGGAAACCTCATTGGCCATTTGGGCTCGACCTG
GGCTTAAAATTAGGATGCCCTCTCTATTGCCTGACATTAGGCGCAACGGG
AAAGGTCCATTTGGTCCACATTTGCCGGTCATCGTCCCGAGTCGAGCCTT
CCGCACCGTGGCCTTCAATCTGGCCGACTTGACCAATGTGTTCCCACCCC
ACCGAGCGGGGTTCCGGGCTGAGAGCTCCGCTATCATCATCATGATTTGG
AACATGGAAAAGACATATTGAAGGAGCCAATCATGCGGATGGATGCATCT
GCAGCCATTAAGTCTCGAGTGGATGGGACGGTCATCGAGGACATGATGGT
AGCCACTTTTCGCTTGAAAGAATGTCTAGGAGAAGAAGGTGTGAGAGAGC
TGTCTGATTGAAATCATAAACATCCCATGATCATATCCATCATATGCATC
ATGGGCATATGCATCTTCGCGGTCCTGCTCAATTCATATTTAATTCGAGT
TAGGATGTCCAACTTTTTCCTCTCGTCAAGAGTTATGAGGAATGAAACGG
GATCAGAAAGCGTGCCCTCGCGGTGTGCTTATCGAGAAAAAATGGCCCAC
ACTTCCAGAGAGCTCCACTCCACCCAGTGTCGTGTCAAAGGACCGGCAGG
CACTTTTCTTCAGTCTGACAGATCTAACTTAGAGAGGACTTTGTCATTCC
TGTCACGATGCTAAAAGGTTCCTTCTTCTGTCAATTCCCGAACGACTATG
GTCAAAGGAAAGTAATTTGAGCTGGCCTCTCTTATGGCGGCCATGGAGCA
GAATGAATGAGGAGTGAAAAGTTGGCTGTCCAAATCGGGAGGAATGAATT
TGTAGCGGGAAACTTCTAGTCTTTAAAGCCAGGCGGGTTAAATAGTTGGA
GGAGTTTCTGATTTATACCGCCAACAGTAAACCAGTGACTAAAATTCCCT
CACCTCGGAGCGTTGGATCATCGACAGAAAAGCGACTTCCTTCACGAGGA
ACCCAAAGTCTCTGCTACAAGCAGGCCAGGTTAATCCCCAGGTTTTTGGC
ATGATTCGTACTTTAGTCGTAGTTGGGTCAATAGAACTCAAATGGGGACA
CCTTCACGGAAAAATAGTGCGTATCAAAGGGTGCTAATTCGAGAGGCGAA
TCAAGGCACTTGCAGTGATCCAAGAACTGTTCCTTTTGCATCGAGAACGA
GCCAACGTTCCTATCAAAGGCGTGTATTCTAAGTAATTTTTTTTTGACTT
TCAGTTGCCTATACTGGGAATGAAGTTTCCTATGTCTGGTCGAATCCTAC
CAATGCCGTAGGCTATGAAGGTAAACTTGAGCTCTCTCAGTTTGATATCA
AGCATACATCGTTCAGGAGCCTCAACTACTCGCGAGGATTCAAGAGTAAG
AGGATAATTTTACTGCATTAAAAGTCGAATACAAAAAACATACAATAAGC
AATAGATCCTAATAATACGATCAAACATGAGGGCTGCAACACATCCATAA
ACATATTCCACGGTGCGGTTAATTGCATCAGCATCCAAGTTGAGTTTCTT
TTCAGCATTGCGCCTCAGCTCTCCTGACTCCTAAGCAGCCCAAGACAGGT
ACTATATGTCCTGTACGATTTTGCCTGTCCTTGCAGGTGGAGACTATTCT
GTGCTTCAAGTTGTTATCGCACTCCAAAGACACACAGGCTACTTTCTCAT
TCAAATATATTTACCGTGCACCTTGTTGGTTATCCTCTCATGGGTTGGAT
TCTGGTTGAACCGGGAGGCGACTTCGGACAGGATTGGCCTGGGTGAGTGA
TCAATTATTACATTTCTGTACATTTCTGTACATTTCTGTACATTTCTGTA
CATTTCTGTACATTTCTGTACATTTCTGTACATTTCTGTACATTTCTGTA
CATTTCTGTACATTTCTGTACATTTCTGTACATTTCTGTACATTTCTGTA
CATTTCTGTACATTTCTGAACATTTCTGAACATTTCGGTTTATTATATTC
TGTAGAGATGGTCAAATAAACGTTAGCAGTTCTTGGCCCAGCTTCTGCAT
TTTGTTCTTCCACTTTTTGACCCTAGGTGGCACATTTTACGGCGATTTAG
CAGAAAAATGTTCAATTCGCAAGGAAACTTAGTTTAGTGTGCGACTTTGA
GACGTGAAATAATATGGGAAAACATAAGTTTGGTGGCTGGATGAAAAAAA
ACAGCAAGACCATTTTGGACCAACTTTGACGGGTAGAGTGCATTTTCGTT
CGTTCAATGTTACTTGTTGGACATCTCTCCTGATTATGCAACGTTATTCA
TTTTATTACCAGCGATACTATTAATATTAGCCAAGGAATTTTTTGAAAAC
CAGGCGTATCGCTAGCCCGCAGAAAGAGCCAATTTGTTCATCCCAACATC
GACTCTTCTTCCAGGTATAACAACAGTTCTCACTCTGTCGACTTTGTCTC
TGGAGAGTAAAACAAGCTTGCCCAAAACTCATTATGCTACAGCCTTAGAC
TGGTTCATCATATGTAGCTTTGGATATTGCGTGGCCACTTTACTAGAATT
CGCGGGCGTGCATTATTTTACGAAGGTAAGACATTCAGGAACAACTACTT
AATTGTTCATGTACAAGGTACAAAATGAGATCCGATGGATTGGATGA

Synonyms

The feature 'cys-loop ligand-gated ion channel subunit' has the following synonyms


Synonym
Tk05853

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