achain crystal structure of rat otoferlin c2a, maker-scaffold510_size151595-snap-gene-0.27 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of achain crystal structure of rat otoferlin c2a vs. L. salmonis genes
Match: EMLSAG00000007482 (supercontig:LSalAtl2s:LSalAtl2s42:550356:655654:-1 gene:EMLSAG00000007482 transcript:EMLSAT00000007482 description:"maker-LSalAtl2s42-augustus-gene-6.11") HSP 1 Score: 160.229 bits (404), Expect = 1.743e-43 Identity = 104/280 (37.14%), Postives = 160/280 (57.14%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGLDHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLR-FGRSRSSSVEEE 282 MSL V L+ + G G+ G+R+ KATFRGVSH++K F + + I+E+L WPIAS L R E + I ++++NRFLNN++LG FSLHRL+D+ +QLAASL+D G PLKA+I L ++Y+SP++ + DDS+DE E A D ++ + + D AL+S+E NI N+ER+ NRR+ V++ SRS+ LD K+K+ + ++ K+++N +++VRNV+R G + S +EE Sbjct: 1 MSLVVKLIGFNGSGTG-GDRIAKATFRGVSHISKTFEDRDDWIDIDEQLDWPIASPLQRDENISIHIMAFNRFLNNRLLGNTTFSLHRLLDQPTVQLAASLLDMNGIPLKASIKLEMSYYSPFSYE-DDSVDELE----------AEDDDNIRSYISDDL----------SDNKALVSIERNIANIERNF--NRRQDEVRL------------------------SRSSS-LDHGSFXEQKRKKPF---SIIKKRSNPLKTVRNVIRTMGVVKGSHGDEE 228
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Match: gi|20139164|sp|Q9ESF1.1|OTOF_MOUSE (RecName: Full=Otoferlin; AltName: Full=Fer-1-like protein 2) HSP 1 Score: 80.4925 bits (197), Expect = 4.632e-15 Identity = 36/121 (29.75%), Postives = 74/121 (61.16%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124 M+L VHL + + G+R+ K TFRG S +++ E + +E RWP+AS + R+E +EIQ+ +Y++ +NK++G L ++V+E+ +++ +L+D + +K ++++ + Y + Sbjct: 1 MALIVHLKTV-SELRGKGDRIAKVTFRGQSFYSRVLENCEGVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFCMVLQKVVEENRVEVTDTLMDDSNAIIKTSLSMEVRYQA 120
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Match: gi|116242695|sp|Q9HC10.3|OTOF_HUMAN (RecName: Full=Otoferlin; AltName: Full=Fer-1-like protein 2) HSP 1 Score: 79.337 bits (194), Expect = 9.556e-15 Identity = 36/121 (29.75%), Postives = 72/121 (59.50%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124 M+L +HL + + G+R+ K TFRG S +++ E + +E RWP+AS + R+E +EIQ+ +Y++ +NK++G L ++V+ES +++ +L+D +K ++ + + Y + Sbjct: 1 MALLIHLKTV-SELRGRGDRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEMLEIQVFNYSKVFSNKLIGTFRMVLQKVVEESHVEVTDTLIDDNNAIIKTSLCVEVRYQA 120
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Match: gi|218511751|sp|Q9ERC5.2|OTOF_RAT (RecName: Full=Otoferlin; AltName: Full=Fer-1-like protein 2) HSP 1 Score: 78.5666 bits (192), Expect = 1.987e-14 Identity = 35/121 (28.93%), Postives = 73/121 (60.33%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124 M+L VHL + + +R+ K TFRG S +++ E + +E RWP+AS + R+E +EIQ+ +Y++ +NK++G L ++V+E+ ++++ +L+D +K ++++ + Y + Sbjct: 1 MALIVHLKTV-SELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA 120
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Match: gi|82232863|sp|Q5SPC5.1|OTOF_DANRE (RecName: Full=Otoferlin; AltName: Full=Fer-1-like protein 2) HSP 1 Score: 77.411 bits (189), Expect = 3.807e-14 Identity = 36/121 (29.75%), Postives = 69/121 (57.02%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124 M+L VHL + + G+R+ K TFRG+S +++ E + + RWPI S + E +EIQ+ +Y++ N+++G L ++V+E L+++ +L+D ++ TI++ I Y + Sbjct: 1 MALVVHLKTVT-ELRGKGDRIAKVTFRGLSFFSRVLENCEDEARFEQAFRWPIGSQVDGDEMLEIQVFNYSKVFTNRLIGTFRMVLQKVVEEGHLEVSDTLIDDNNTAIQTTISIEIKYQT 120
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1325319999|ref|XP_023341789.1| (otoferlin-like [Eurytemora affinis]) HSP 1 Score: 152.525 bits (384), Expect = 7.985e-40 Identity = 102/290 (35.17%), Postives = 150/290 (51.72%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSP-----YAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGLDHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLRFGRSRSSSVEEEERCLMG 288 MS+ V L + G G+S GER+ K TFRGVS TK+F +S I + + WPIA L E++EI +L++NRFLNN+++ + LHRL+DES QL A+++D RP+KA++ L I Y P +D D ++DE ++ ++DD+ ALI +E NI N+ERS+++N+ R Q S+RS LD+ GK+K + V+K++ NA+RSV+NVL R RS E+EER L G Sbjct: 1 MSVGVRLEKFTGAGTS-GERIFKLTFRGVSKQTKLFDHKGDTSVITQTVEWPIARGLDVDEKLEILLLAHNRFLNNRVVAVVSLPLHRLLDESHQQLMATMLDPNNRPIKASLELFIWYKGPGIHFRNFMDMDTGTEQDESAWEG---------------------------DMSDDQRALIDIEKNIANIERSMSANQ--------------------LAKTSRQQGGSTRS---LDKNDENSGKRKFFISSEKVQKKRMNALRSVKNVLSMARRRSDD-EDEERNLYG 238
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1339076649|ref|XP_023725682.1| (otoferlin-like [Cryptotermes secundus]) HSP 1 Score: 103.605 bits (257), Expect = 2.731e-20 Identity = 79/295 (26.78%), Postives = 132/295 (44.75%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGLDHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLRFGRSRS---SSVEEEERCLMGNGH-GPQ 294 MSL + + ++ GE++ K FRGVSH +++ + +++R WP+A + E ++IQ+L+YNR+ +NK+LG L +LV + L + +L+D +PL A + + Y P D S G P D+ AL DD+ LI +E NI NLERS RR G S D A S +L ++G+ K ++++++ ++S+++++R G+ R S EE + L G G GP+ Sbjct: 1 MSLTLRVKYFQLSVKCKGEKITKVDFRGVSHYSRVLEDPGDLIDVDQRFEWPVARPVESHEVLQIQLLAYNRYFSNKVLGTYGLVLQKLVQDGHLMVTDTLLDLNNKPLPAKVAFEVWYRVP-----DGSA----------GFWPETDAYD----------------ALDDDQQMLIDIEQNIANLERSFTQGRR--------GSWQSAEGDKATTA----------SASLLKRVGSLSAADKSP----APERKRSSTLKSMKSLMRLGKQRPPRDSDGEENQALLRGEGEMGPR 242
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1238851173|ref|XP_022243394.1| (otoferlin-like isoform X1 [Limulus polyphemus]) HSP 1 Score: 98.9821 bits (245), Expect = 1.114e-18 Identity = 78/274 (28.47%), Postives = 121/274 (44.16%), Query Frame = 0 Query: 19 SSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGL-DHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLRFGRSRSSSVEEEERCLMGNGH 291 S GER+ KATFRGVS TK+ + + +E WP+A + E +EIQ+L+YN++ NK+ G L +L+++ L L L+D P+ I ++Y +P D S+ +R SG + D DDR ALI +E NI NLERSI S + ELG+ H G + + K ++KR+ ++S+ +++R G+ R S +EE+ L G+ H Sbjct: 15 SRGERLAKATFRGVSRYTKVVENSDDIAIFDEVFEWPVARAVESHEVLEIQLLNYNKYFTNKVTGCYGLVLQQLIEDGHLTLTDMLLDINNMPIGIDITFEVSYTAP-----DGSVG----------------NRKSSGFQYGSFD---------DDRQALIDIEENIANLERSI-------SQRAELGVGSHQG--------------------SLASLLPPKSPERKRSL---------PATMKSLASMMRLGKHRPLSDDEEKASLKGSEH 222
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1238851175|ref|XP_022243395.1| (otoferlin-like isoform X2 [Limulus polyphemus]) HSP 1 Score: 98.9821 bits (245), Expect = 1.178e-18 Identity = 78/274 (28.47%), Postives = 121/274 (44.16%), Query Frame = 0 Query: 19 SSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGL-DHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLRFGRSRSSSVEEEERCLMGNGH 291 S GER+ KATFRGVS TK+ + + +E WP+A + E +EIQ+L+YN++ NK+ G L +L+++ L L L+D P+ I ++Y +P D S+ +R SG + D DDR ALI +E NI NLERSI S + ELG+ H G + + K ++KR+ ++S+ +++R G+ R S +EE+ L G+ H Sbjct: 15 SRGERLAKATFRGVSRYTKVVENSDDIAIFDEVFEWPVARAVESHEVLEIQLLNYNKYFTNKVTGCYGLVLQQLIEDGHLTLTDMLLDINNMPIGIDITFEVSYTAP-----DGSVG----------------NRKSSGFQYGSFD---------DDRQALIDIEENIANLERSI-------SQRAELGVGSHQG--------------------SLASLLPPKSPERKRSL---------PATMKSLASMMRLGKHRPLSDDEEKASLKGSEH 222
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1228000495|ref|XP_021932129.1| (otoferlin-like [Zootermopsis nevadensis]) HSP 1 Score: 90.5077 bits (223), Expect = 7.608e-16 Identity = 54/199 (27.14%), Postives = 90/199 (45.23%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGA----LISLETNILNLERSIASNRR 198 MSL + + ++ GE++ K FRGVSH +++ + +++R WP+A + E ++IQML+YNR+ +NK+LG L ++V + L +A +L+D +PL A + + Y SP G++ + L++ LI +E NI NLERS RR Sbjct: 1 MSLTLRVKHFQLSVKCKGEKITKVDFRGVSHYSRVLQDPGELIDVDQRFEWPVARPVESHEVLQIQMLAYNRYFSNKVLGTYGLVLQKVVQDGHLMVADTLLDLNNKPLPAKVTFEVWYSSP---------------------------------------DGSAGSWLSNXXXXXXQMLIDIEQNIANLERSFIQGRR 160
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1316156673|ref|XP_023223425.1| (LOW QUALITY PROTEIN: otoferlin-like [Centruroides sculpturatus]) HSP 1 Score: 90.1225 bits (222), Expect = 9.167e-16 Identity = 54/203 (26.60%), Postives = 97/203 (47.78%), Query Frame = 0 Query: 22 ERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTD--------DSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGLDHSGCDDD 216 +R+ +ATFRGVSH TK+ E + +E WP+ + E +EIQ+ +YN++ +NK++G L +LV++ L++ +LVD P ++ ++Y +P D S D+D++V + AN RSLS +++ S +L R + +RS+ + + + + LG +DD Sbjct: 18 DRLARATFRGVSHYTKVIENAEDDITFDEIFEWPVGRPVENHESLEIQLYNYNKYFSNKLIGSYGLVLQQLVEDGFLRVTDTLVDINNMPTGVSLTFEVSYSAPDGSVGDWQAPSFNYGSFDDDQQVLIDLEQNIANLERSLSQRAESELSRQGSLASLTSPRSP---------DRKRSLPATMKSIASMMRLGKQRPPVEDD 211
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1170988763|gb|ARD05933.1| (otoferlin, partial [Polyodon spathula]) HSP 1 Score: 82.8037 bits (203), Expect = 1.143e-14 Identity = 32/109 (29.36%), Postives = 66/109 (60.55%), Query Frame = 0 Query: 16 DGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124 D S G+R+ K FRG+S T++ E + +E RWP+AS + +E +E+Q+ +Y++ N+++G L ++V+E+ L+++ +L+D P++ ++ + I Y + Sbjct: 4 DLSGKGDRIGKVVFRGLSFYTRVLENCEDEAKFDETFRWPVASNIDGNEMLEVQVFNYSKVFTNRLIGTFRMVLQKVVEEAQLEVSDTLIDDNNTPIRTSVTIEIKYQA 112
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1126174979|ref|XP_019619689.1| (PREDICTED: otoferlin-like [Branchiostoma belcheri]) HSP 1 Score: 85.8853 bits (211), Expect = 2.018e-14 Identity = 40/122 (32.79%), Postives = 69/122 (56.56%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSP 125 M+L +HL+ G G+RV K TFRGVSH TKI E + +E WP+AS + +E +E+Q+ +Y++ +N+++G L +L+ E L + +L+D + ++L + Y +P Sbjct: 1 MALLLHLICV-GPFRGRGDRVAKVTFRGVSHYTKILEGVEEDAYFDETFEWPVASPIEGNEYLEVQVYNYSKVFSNRLIGTFRMVLQKLIQEGQLSITETLLDANNTVINTEVDLELKYQAP 121
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1133418657|ref|XP_019864847.1| (PREDICTED: otoferlin-like [Aethina tumida]) HSP 1 Score: 84.7297 bits (208), Expect = 5.421e-14 Identity = 59/194 (30.41%), Postives = 95/194 (48.97%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVE-GESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASN 196 MS+ V L ++ GE++ K FRGVSH+TKI + G +++R WPIA + +E + I++ S NR ++++G L +V + L ++ +L+D+ +PL A+I + Y P DDSL +F S A D L DD+ LI +E NI N+ER++ S+ Sbjct: 1 MSISVKLKQFQI-PKCKGEKLAKIEFRGVSHLTKILEDNGGELIVVDQRFDWPIARAVEENELLVIELYSRNRLFADRLIGSYTLVLQTVVQDGRLSISDTLLDSNNKPLPASIQFDVLYTLP-----DDSL-------ASFTGSQAFD-------------------MLEDDQQMLIDIEQNIANIERNLTSH 162
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1331465258|ref|XP_023422086.1| (LOW QUALITY PROTEIN: otoferlin [Cavia porcellus]) HSP 1 Score: 84.7297 bits (208), Expect = 5.707e-14 Identity = 39/121 (32.23%), Postives = 74/121 (61.16%), Query Frame = 0 Query: 4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124 M+L VHL + + S G+R+ K TFRG S +++ E + +E RWP+AS + R+E +EIQ+ +Y++ +NK++G L ++V+E+ +++ +L+D +K T+N+ + Y + Sbjct: 1 MALLVHLKTV-SELRSRGDRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASTIDRNEMLEIQIFNYSKVFSNKLIGSFRMVLQKVVEENHVEVTDTLMDDNNAVIKTTLNVEVRYQA 120 The following BLAST results are available for this feature:
BLAST of achain crystal structure of rat otoferlin c2a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 4
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold510_size151595:11737..14843+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold510_size151595-snap-gene-0.27 ID=maker-scaffold510_size151595-snap-gene-0.27|Name=achain crystal structure of rat otoferlin c2a|organism=Tigriopus kingsejongensis|type=gene|length=3107bp|location=Sequence derived from alignment at scaffold510_size151595:11737..14843+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'achain crystal structure of rat otoferlin c2a' has the following synonyms
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