sodium channel protein nach, maker-scaffold137_size321222-snap-gene-2.20 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000003185 (supercontig:LSalAtl2s:LSalAtl2s176:68925:134641:-1 gene:EMLSAG00000003185 transcript:EMLSAT00000003185 description:"maker-LSalAtl2s176-augustus-gene-1.7") HSP 1 Score: 290.812 bits (743), Expect = 4.743e-87 Identity = 146/225 (64.89%), Postives = 178/225 (79.11%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQ-LNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIF----EVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 I I I ++L IND+++S TFS YFNV W+EPRL + F + + S + L PV+L LV++LWLPN+FIYNLKTFKV++VLSK AGLW+ ++K+I+YSQA+ IT ICPM F+ FPLDTQ CKFQVGSYSY+ KM F VT GYA SRAIVLDYDIQ++SL +D I+ SG LGNYSLAGFEMVL+R+VSHYII YYLPSGLFVVVSWISF+VP +IPG Sbjct: 60 IGIDIGEVLRINDKEYSVTFSSYFNVLWKEPRLQYSDKFTKEVNNSSPETLIPVNLELVNELWLPNIFIYNLKTFKVVEVLSKHAGLWITSEKDILYSQATHITFICPMRFDAFPLDTQRCKFQVGSYSYDDTKMRFAGSPRVT--GYAEXSRAIVLDYDIQIKSLKMKDMIYHSGTLGNYSLAGFEMVLHRYVSHYIITYYLPSGLFVVVSWISFVVPPTVIPG 282
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000001113 (supercontig:LSalAtl2s:LSalAtl2s1186:160345:169896:1 gene:EMLSAG00000001113 transcript:EMLSAT00000001113 description:"maker-LSalAtl2s1186-snap-gene-1.38") HSP 1 Score: 269.24 bits (687), Expect = 1.378e-78 Identity = 128/229 (55.90%), Postives = 174/229 (75.98%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQ-------NSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYA--HTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 + I I+++L IND+D+S TFS YFNV+W+E R+ L+P F + N++ + + P+ V D+W+P++FIY+LKT+KV+DVL+KLAGLW+ A K I+YSQA+ IT ICPM F+ FPLDTQVCKFQVGS SY+ KM F + GY T+ +I LDYDIQ++ L ++D++F G LGN+SLAGFE+VL+R+VS YII YYLPSGLFV+VSWISFL+P ++IPG Sbjct: 87 VSIDIAEVLRINDKDYSITFSGYFNVKWQESRIELSPDFGEEVAGPGVNTTNNPNIVVPMSTEFVKDVWMPDIFIYSLKTYKVMDVLNKLAGLWIGADKTILYSQATHITFICPMRFDKFPLDTQVCKFQVGSCSYDDTKMRFMTENAGYQSPKTANSIALDYDIQIKMLSKEDQVFLGGGLGNFSLAGFELVLHRYVSTYIITYYLPSGLFVIVSWISFLIPMDVIPG 315
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000003314 (supercontig:LSalAtl2s:LSalAtl2s181:427820:487404:-1 gene:EMLSAG00000003314 transcript:EMLSAT00000003314 description:"augustus_masked-LSalAtl2s181-processed-gene-4.3") HSP 1 Score: 225.713 bits (574), Expect = 1.242e-64 Identity = 112/224 (50.00%), Postives = 156/224 (69.64%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPS----FFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 + I I DI +I+D+DFS T + +F V+W++ RL ++ F+ D+ PVD++ + + WLP+ I NLK FK +DVLSKL GLW+N EIMY+ A++IT ICPM FN FPLD QVC+FQVGS++Y++ KM+F + R+ VLDY I+++ LP++ + + GNYS+AGFE+ L R VSHYII YYLPSG+FV+VSWISFLVP +I+PG Sbjct: 89 VGIDIKDIPKIDDKDFSITLNSFFVVRWKDERLIIDQKKMDKIFKKGE-DADSWIPVDVSFIKEFWLPDAEILNLKEFKTLDVLSKLEGLWLNRNFEIMYAVATRITFICPMTFNSFPLDVQVCRFQVGSFNYDISKMVFHDEFIADQSQIRS-VLDYFIEIRKLPDEYQHY-VALTGNYSVAGFELTLQRKVSHYIITYYLPSGMFVIVSWISFLVPPDIVPG 309
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000008455 (supercontig:LSalAtl2s:LSalAtl2s519:173869:181393:1 gene:EMLSAG00000008455 transcript:EMLSAT00000008455 description:"snap_masked-LSalAtl2s519-processed-gene-1.11") HSP 1 Score: 218.394 bits (555), Expect = 2.181e-63 Identity = 102/221 (46.15%), Postives = 148/221 (66.97%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRL-HLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 + + + D+L ++D+ FS T ++YF V+W E RL + P ++ P+D++ ++ LW+PNVF+YNL +F +D L KLAGLWV K++ Y+QA+ +T +CPM FN FPLD CKF VGS +Y+M +M+F+ L Y S +LDY IQ++ L DRI + G GNYSL GFEM L R+++ Y+ YYLPSGLFV VSW+SFL+P +++PG Sbjct: 1 MHLEVLDVLRVDDKKFSVTLNMYFGVRWTENRLTKMTPG--------TSSWIPIDMDFMNYLWVPNVFVYNLVSFHALDCLKKLAGLWVAEGKDLFYNQATHVTFMCPMRFNKFPLDQHSCKFLVGSTNYDMTRMLFDYNTLSYDPLSGNTILDYRIQIKPLKTADRIINYGETGNYSLTGFEMTLTRNMAKYLYIYYLPSGLFVGVSWVSFLIPPDVVPG 213
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000003313 (supercontig:LSalAtl2s:LSalAtl2s181:399664:401012:-1 gene:EMLSAG00000003313 transcript:EMLSAT00000003313 description:"maker-LSalAtl2s181-augustus-gene-4.10") HSP 1 Score: 197.593 bits (501), Expect = 3.106e-55 Identity = 105/225 (46.67%), Postives = 142/225 (63.11%), Query Frame = 0 Query: 1 LIEIHISDILEINDRDFSFTFSLYFNVQWREPRLHL---NPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSL-PEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 ++ + I DI +IND DFS T + YF V+W + RL + N S Q ++ ++ LWL +V I NL +F+ + VLSKL G+W+ E+MYS A++ITIIC M FN FP+D QVCKFQVGS++Y+M KMIF + S+ LDY + Q L P++ G NYS+AGF+++L R VS YI+ YYLPS LFV+VSWISFLV E+IPG Sbjct: 56 IVGVDIKDIPKINDVDFSITLNAYFYVKWVDKRLRILSYNSSDINRKPHMKKQSIAINSKIIEKLWLXDVEILNLSSFETLSVLSKLEGVWIGENSELMYSLATRITIICRMKFNAFPMDIQVCKFQVGSFNYDMNKMIFFNDFIPSKQNSQQTTLDYQVNFQDLRPDETHYLALG--MNYSVAGFQIILTRKVSFYIVTYYLPSALFVLVSWISFLVNPEVIPG 278
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000010518 (supercontig:LSalAtl2s:LSalAtl2s69:18020:76641:-1 gene:EMLSAG00000010518 transcript:EMLSAT00000010518 description:"maker-LSalAtl2s69-snap-gene-1.19") HSP 1 Score: 134.42 bits (337), Expect = 3.320e-33 Identity = 89/257 (34.63%), Postives = 132/257 (51.36%), Query Frame = 0 Query: 1 LIEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLN---PSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTH---LGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPGLWWGKFQTLAFVSSTCSGRYPAS-PTPAES 250 + + +I E++D+ + + +YF+V W+EPRL +N P++ ++ + + Q+N L L+ + W P++ IY L+ F VL ++GL V K I Y+ + I C M+F+ +P D C QVGSY Y E + + T LG SR L Y I+ Q LP +++ + GNYS GF++ R I YLP LFV VSW+SFLV E +PG G TL V +S P PA S Sbjct: 64 IFNFDVREISEVDDKSQTLSIPMYFSVAWKEPRLWINETDPAWNESITGPTNQVNENPL-LMDEFWTPDLEIYGLEDFGAKRVLKSMSGLRVGKNKVIEYNSMVNVKISCRMLFDNYPFDKHKCYLQVGSYYYTEETVTCDSTFTDPLG-NEPSRQRNLQYFIKFQDLPPEEKKMELLS-GNYSACGFQITFERKRLQLIYQIYLPCILFVAVSWVSFLVRPECVPGR-MGMLITLFLVLVNIFNTVRSSAPVPASS 316
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000011211 (supercontig:LSalAtl2s:LSalAtl2s765:133774:155316:1 gene:EMLSAG00000011211 transcript:EMLSAT00000011211 description:"maker-LSalAtl2s765-snap-gene-1.16") HSP 1 Score: 121.709 bits (304), Expect = 4.137e-30 Identity = 73/224 (32.59%), Postives = 113/224 (50.45%), Query Frame = 0 Query: 24 YFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLN--LVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYD------------------------IQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 YF V W +PRL +N S + S + N V+++ + +W P + IY L+ F VL +++G+ + K I Y +ITI C M+F+ +PLD C+FQVGS Y ++T + ++ ++ DYD I + LPE+DR P G Y+ GF++ L R Y++ YLPS +FVV SW+SFL+ E++PG Sbjct: 1 YFGVSWLDPRLKINSSASEWSEARTGPKNEVNISPGSLRYIWYPELEIYGLEKFGRQRVLKEMSGVRIRKNKTIHYELGVRITISCRMMFDDYPLDAHTCQFQVGSCKYQ------DITR-PWGKSTYQLLSDYDSNKTVQCSSSYVYDQIRQRSLQHYITFEELPEKDRSV-VLPSGTYAACGFQIQLVRKQMQYLVQVYLPSCMFVVTSWVSFLIKPEVVPG 216
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000001321 (supercontig:LSalAtl2s:LSalAtl2s1223:193582:196888:1 gene:EMLSAG00000001321 transcript:EMLSAT00000001321 description:"snap_masked-LSalAtl2s1223-processed-gene-2.46") HSP 1 Score: 96.2857 bits (238), Expect = 1.908e-21 Identity = 49/165 (29.70%), Postives = 94/165 (56.97%), Query Frame = 0 Query: 59 VHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLD-YDIQVQSLPEQDRIFDSGPLG-NYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 + D W P+ + +++K + +++ +A L V K I Y++ +T+ CPM F +P+D Q+C+ ++ S+ Y+M + T + + I++D +D+++ D F+ P G +S G + L RH+ +I Y+PS +FV ++W+SF VPS+++PG Sbjct: 31 ISDFWTPDSYFHHVKASNEVKIMTPVASLRVRPDKIIQYTKIILVTLGCPMSFYNYPMDNQICRLELQSFGYDMN--LINYTWMRPPQMKKDIIIDNHDVEI-----ADYTFEYSPEGIRFSGLGIRIELKRHLGFHITQSYIPSIIFVAIAWMSFHVPSDVVPG 188
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000003420 (supercontig:LSalAtl2s:LSalAtl2s1882:908:1751:1 gene:EMLSAG00000003420 transcript:EMLSAT00000003420 description:"maker-LSalAtl2s1882-augustus-gene-0.6") HSP 1 Score: 85.1149 bits (209), Expect = 6.925e-20 Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 0 Query: 465 LVMPIGQTVREYAETSTTHGISYVFEDDQPMFERILWLIITAVCVTIAITLSILAYLDWQDNPVVTFVSTTALPIENITFPAVTICGQ 552 L + +T+R+YAE ST HG+ Y+FE + F +W + + I+ +S AY DW++NP++ V+TT LPIE I FPA+T+C Q Sbjct: 14 LHKKVNKTLRDYAEVSTGHGMRYIFEHEGNGFTHFIWATMVIGFIVISSIISKNAYDDWENNPILXSVATTGLPIEKIQFPAITLCNQ 101
BLAST of sodium channel protein nach vs. L. salmonis genes
Match: EMLSAG00000011971 (supercontig:LSalAtl2s:LSalAtl2s84:948400:1079594:1 gene:EMLSAG00000011971 transcript:EMLSAT00000011971 description:"maker-LSalAtl2s84-augustus-gene-10.5") HSP 1 Score: 92.0485 bits (227), Expect = 1.212e-19 Identity = 72/291 (24.74%), Postives = 126/291 (43.30%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIF------EVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPGLWWGKFQTLAFVSSTCSGRY----PASPTPAESPWTRESSTGSSWTCVSSASLDPLLNLLSESST 282 + I++ I I+D ++ + F QW + RL ++ ++ L + L +W+P+ F N K + +++ + + EI+YS +T+ CPM +PLD QVC Q+ SY + + +I+ V + H R + Y + + G YS E++ R S+Y+I Y+P + V+VSW+SF + IP TL +S+ SG P S T A WT + ++ +DP +L+ +S+T Sbjct: 44 VNIYLRTISRIDDVKMEYSVQVTFREQWNDERLR----YYDDTH---GHLKYLTLTDPTKVWMPDTFFRNEKEARKHEIIVPNVYVRIFPNGEILYSIRISLTLACPMDLRLYPLDKQVCVLQIASYGWAKDDLIYLWKEKDPVQVVPGLHLPRFTLEQYKSAYCDV--------TTNTGEYSCLKVELIFKREFSYYLITIYVPCCMLVIVSWVSFWLDQNAIPARVSLGVTTLLTMSTQTSGINAQLPPVSYTKAIDVWTGKKRNSEY---RNNIRVDPXGDLVYKSTT 316
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|410516955|sp|P56476.4|GBRR2_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit rho-2; AltName: Full=GABA(A) receptor subunit rho-2; AltName: Full=GABA(C) receptor; Flags: Precursor) HSP 1 Score: 93.5893 bits (231), Expect = 1.737e-18 Identity = 60/225 (26.67%), Postives = 104/225 (46.22%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQ-----VQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 +++ + + I++ D FT +LY WR+ RL S N SM D LV +W+P+VF + K + D + L V ++YS +T +C M F++FPLD+Q C ++ SY+Y E ++ L + + ++ D I +Q R+ G Y+ L RH+ +++ Y P+ L V++SW+SF + +P Sbjct: 81 VDVQVESLDSISEVDMDFTMTLYLRHYWRDERLAFPSS--SNKSMT------FDGRLVKKIWVPDVFFVHSKRSFIHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLM-----LYWKNGDESLKTDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDHRAVPA 292
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|410516947|sp|P47742.3|GBRR2_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit rho-2; AltName: Full=GABA(A) receptor subunit rho-2; AltName: Full=GABA(C) receptor; Flags: Precursor) HSP 1 Score: 92.4337 bits (228), Expect = 3.335e-18 Identity = 60/225 (26.67%), Postives = 103/225 (45.78%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQ-----VQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 +++ + + I++ D FT +LY WR+ RL S N SM D LV +W+P+VF + K D + L V ++YS +T +C M F++FPLD+Q C ++ SY+Y E ++ L + + ++ D I +Q R+ G Y+ L RH+ +++ Y P+ L V++SW+SF + +P Sbjct: 81 VDVQVESLDSISEVDMDFTMTLYLRHYWRDERLAFPSS--SNRSM------TFDGRLVKKIWVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLM-----LYWKNGDESLKTDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDHRAVPA 292
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|410516950|sp|Q0II76.4|GBRR2_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit rho-2; AltName: Full=GABA(A) receptor subunit rho-2; AltName: Full=GABA(C) receptor; Flags: Precursor) HSP 1 Score: 92.4337 bits (228), Expect = 3.679e-18 Identity = 58/225 (25.78%), Postives = 105/225 (46.67%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQ-----VQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 +++ + + I++ D FT +LY W++ RL + N SM D LV +W+P+VF + K + D + L V +++YS +T +C M F++FPLD+Q C ++ SY+Y E ++ L + + ++ D I +Q R+ G Y+ L RH+ +++ Y P+ L V++SW+SF + +P Sbjct: 81 VDVQVESLDSISEVDMDFTMTLYLRHYWKDERLAFPSA--SNKSMT------FDGRLVKKIWVPDVFFVHSKRSFIHDTTTDNIMLRVFPDGQVLYSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLM-----LYWKNGDESLKTDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPA 292
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|410516956|sp|P28476.5|GBRR2_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit rho-2; AltName: Full=GABA(A) receptor subunit rho-2; AltName: Full=GABA(C) receptor; Flags: Precursor) HSP 1 Score: 92.0485 bits (227), Expect = 4.724e-18 Identity = 58/225 (25.78%), Postives = 104/225 (46.22%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQ-----VQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 +++ + + I++ D FT +LY W++ RL + + N SM D LV +W+P+VF + K D + L V ++YS +T +C M F++FPLD+Q C ++ SY+Y E ++ L + + ++ D I +Q R+ G Y+ L RH+ +++ Y P+ L V++SW+SF + +P Sbjct: 81 VDVQVESLDSISEVDMDFTMTLYLRHYWKDERLAFSSA--SNKSM------TFDGRLVKKIWVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLM-----LYWKNGDESLKTDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPA 292
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|223590211|sp|P56475.2|GBRR1_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit rho-1; AltName: Full=GABA(A) receptor subunit rho-1; AltName: Full=GABA(C) receptor; Flags: Precursor) HSP 1 Score: 91.6633 bits (226), Expect = 6.841e-18 Identity = 59/226 (26.11%), Postives = 106/226 (46.90%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGF------EMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 +++ + + I++ D FT +LY W++ RL S N SM D LV +W+P++F + K + D + L V +++YS +T +C M F+ FPLDTQ C ++ SY+Y + ++ L + + ++ D I + Q+ + L YS G+ L RH+ +++ Y P+ L V++SW+SF + +P Sbjct: 102 VDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSS--NNLSM------TFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLM-----LYWKKGNDSLKTDERISLSQFLIQE-FHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPA 313
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|116242495|sp|P23415.2|GLRA1_HUMAN (RecName: Full=Glycine receptor subunit alpha-1; AltName: Full=Glycine receptor 48 kDa subunit; AltName: Full=Glycine receptor strychnine-binding subunit; Flags: Precursor) HSP 1 Score: 90.8929 bits (224), Expect = 1.301e-17 Identity = 61/244 (25.00%), Postives = 112/244 (45.90%), Query Frame = 0 Query: 4 IHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPL--GNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPGLWWGKFQTLAFVSSTCSGRYPASP 245 I I+ I + + +++ QW +PRL N + + S+D +D +++ +W P++F N K ++ + L ++ ++YS +T+ CPM FP+D Q C Q+ S+ Y M +IFE G + + L I + E+D + + G ++ L R + +Y+I Y+PS L V++SWISF + + P T+ +++ SG + P Sbjct: 71 IFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNE--YPDDSLD------LDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQGAVQVADGLTLPQFILKE---EKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLP 303
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|1730196|sp|P50573.1|GBRR3_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit rho-3; AltName: Full=GABA(A) receptor subunit rho-3; AltName: Full=GABA(C) receptor; Flags: Precursor) HSP 1 Score: 90.8929 bits (224), Expect = 1.308e-17 Identity = 59/226 (26.11%), Postives = 110/226 (48.67%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGF------EMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 I++ + I I++ + FT + Y W++ RL + N SM D L+ +W+P++F + K + D + L V+ +++S ++ +C M F+ FPLDTQ C ++ SY+YN E ++ L + H ++++ + I + ++ SG L YS G+ VL RH+ +++ Y P+ L V++SW+SF + +P Sbjct: 84 IDVQVESIDSISEVNMDFTMTFYLRHYWKDERLSFPST--TNKSM------TFDRRLIQKIWVPDIFFVHSKRSFIHDTTVENIMLRVHPDGNVLFSLRITVSAMCFMDFSRFPLDTQNCSLELESYAYNEEDLM-----LYWKHGNKSLNTEEHISLSQFFIEEFSASSG-LAFYSSTGWYYRLFINFVLRRHIFFFVLQTYFPAMLMVMLSWVSFWIDRRAVPA 295
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|12644526|sp|P57695.1|GLRA1_BOVIN (RecName: Full=Glycine receptor subunit alpha-1; AltName: Full=Glycine receptor 48 kDa subunit; AltName: Full=Glycine receptor strychnine-binding subunit; Flags: Precursor) HSP 1 Score: 90.5077 bits (223), Expect = 1.410e-17 Identity = 61/244 (25.00%), Postives = 112/244 (45.90%), Query Frame = 0 Query: 4 IHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPL--GNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPGLWWGKFQTLAFVSSTCSGRYPASP 245 I I+ I + + +++ QW +PRL N + + S+D +D +++ +W P++F N K ++ + L ++ ++YS +T+ CPM FP+D Q C Q+ S+ Y M +IFE G + + L I + E+D + + G ++ L R + +Y+I Y+PS L V++SWISF + + P T+ +++ SG + P Sbjct: 71 IFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNE--YPDDSLD------LDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQGAVQVADGLTLPQFILKE---EKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLP 303
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|223590212|sp|P50572.2|GBRR1_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit rho-1; AltName: Full=GABA(A) receptor subunit rho-1; AltName: Full=GABA(C) receptor; Flags: Precursor) HSP 1 Score: 90.5077 bits (223), Expect = 1.563e-17 Identity = 58/226 (25.66%), Postives = 106/226 (46.90%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGF------EMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 +++ + + I++ D FT +LY W++ RL + N SM D LV +W+P++F + K + D + L V +++YS +T +C M F+ FPLDTQ C ++ SY+Y + ++ L + + ++ D I + Q+ + L YS G+ L RH+ +++ Y P+ L V++SW+SF + +P Sbjct: 102 VDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPST--NNLSM------TFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLM-----LYWKKGNDSLKTDERISLSQFLIQE-FHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPA 313
BLAST of sodium channel protein nach vs. SwissProt
Match: gi|187471177|sp|A8MPY1.2|GBRR3_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit rho-3; AltName: Full=GABA(A) receptor subunit rho-3; AltName: Full=GABA(C) receptor; Flags: Precursor) HSP 1 Score: 90.5077 bits (223), Expect = 1.625e-17 Identity = 60/226 (26.55%), Postives = 109/226 (48.23%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGF------EMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 I++H+ I I++ + FT + Y W++ RL + N SM D L +W+P++F + K + D + L V+ ++ S ++ +C M F+ FPLDTQ C ++ SY+YN + ++ L + H ++++ + + + +D SG L YS G+ VL RHV +++ Y P+ L V++SW+SF + +P Sbjct: 87 IDVHVESIDSISETNMDFTMTFYLRHYWKDERLSFPST--ANKSM------TFDHRLTRKIWVPDIFFVHSKRSFIHDTTMENIMLRVHPDGNVLLSLRITVSAMCFMDFSRFPLDTQNCSLELESYAYNEDDLM-----LYWKHGNKSLNTEEHMSLSQFFIEDFSASSG-LAFYSSTGWYNRLFINFVLRRHVFFFVLQTYFPAILMVMLSWVSFWIDRRAVPA 298
BLAST of sodium channel protein nach vs. nr
Match: gi|1325273324|ref|XP_023321306.1| (uncharacterized protein LOC111696020 [Eurytemora affinis]) HSP 1 Score: 295.049 bits (754), Expect = 1.536e-81 Identity = 218/802 (27.18%), Postives = 378/802 (47.13%), Query Frame = 0 Query: 475 EYAETSTTHGISYVFEDDQPMFERILWLIITAVCVTIAITLSILAYLDWQDNPVVTFVSTTALPIENITFPAVTICGQGLIQEVVSAAIMKKFGYFV----DSKGKSLSDMTSAEKSNLYEMYLEEKF-----NGLDPKDIIFSMALPDPDAAAATAVL----------SAQVHDPVAGQMGYCFQ----IQATNPEPSKKCSIGPQEKLPDPANLFTAKEVENFG----SDTSKGTFYSDST--INEALSIHGFFTISANAQTS----TNPLIEV---------TTSSNISDLMKNLPCQDAEKGSLICVVDDDVVAQSKTPSK-PMPKLEKVPP---IVDKFLDPIKRESLLQDIAAKRNLSLSNFKNLNLTATYRDLFEILWYSQLPCFDVQGTTSRVKDEKSMVKRCFWKGFLINCALIFNTFPTDHGMCCTFNMKKAEEMFQSNRYSRMVTRMQENDFIASFGNPNLPAWYKD-QNEPNS-KAGKYKGLTLILDAHTDIVSPGTVSADFQGFYALVEENSQFPLVKERSFLIQPGHTTNVALSATGIVASSGIKNVSPLKRNCYFPDE--------------------------------YFPTTDDKARPCDPWLTKEFLRHMEQIPDSTCSYCLPDCEGTVYETSVTCAPFRRCDVKNLGTSPLCSLDTAMITNPPIWSKEVNRDYQASLGLQPSYVTNGIDSNERRYVSRS----AVFQEQQKIDPVYNAYEKDIAVAHFYFNTPTVFQFSREARMSTLDYVSQIGGLLGLFIGFSVISGAEIVYWLTFRLARN 1192 +Y + S+ HG S+V + P ++R+ W I I++ +++ + +W++N V+T ++++A PI TFP VTIC QGL E V A+++ F + K S++D +A + E Y+ KF +D D++++M+ + + + + L + + V Q IQ T E + + P E + + TA EV N S+TS+ + S +T NEA++ S N Q++ TN +I +T++ +++ Q A D++ V S+T K + + + +P +D FL+P K ++ + K + + S F N+ Y ++F++LWYS+LPC + S+++ C + G ++C IF PTD G+CC FN ++E + + Y+RM+ ++ D +KD Q +P S GK GL+ +LD H+DI+S GTV D GF V E+ +FP ++ +S ++ G ++ + + SS + ++ P R C+ DE Y P ++ PCDPW + +F + M++ +C+ CLPDC T Y + + + R CD KNL SP+C L+ ++ P I+ E+N+ YQ + P+Y+ N + S Y + + +F E ++ Y+A+ KD++ YF PT Q+ R + L ++S IGG GLF+GFS +S E++YW +R N Sbjct: 19 KYTQVSSAHGFSFVGNTELPWYDRLFWFFIVIAFTIISVYITVTGFNEWRENQVLTTLTSSAAPISGETFPTVTICSQGLDLEAVGNALLRDFEEWRLENEKDKNSSITDEAAATDLAMKE-YISAKFMISNETTIDLFDLVYAMSSSNIEKTMSVSQLHLNLDQIILVNGSIKSSVDTSQSVPIQNTENIQLTATEVANEAITTPSETSENYQS--TATEVTNEAITTPSETSEN-YQSTATEVTNEAITTPS--ETSENYQSTATAVTNEVITTPTETSQNYQSTATAVTNKAITTSAQTAIDNEKEKNTDNNGVNGSRTRRKRAVTESDNIPSDLETIDLFLNPDKSQTRTSEAKLKSDDTQS-FITKNIKKIYEEIFKLLWYSKLPC------SPTYVSSNSLIQNCQFGGKAMDCRKIFKPSPTDIGICCAFN---SQETLRESNYTRMLNQLNYKDMEG----------FKDIQKDPLSIITGKGNGLSFMLDQHSDIISFGTVEGDANGFLMYVGESDEFPTLQVKSLMLNAGSNHDIEIVPYFVTTSSDLDSMDPETRTCFKRDEKDLYFYSKYSQSSCRFECSLLLAEQEEGCIPWYLPQRNN-GTPCDPWKSSKFRQTMKKQKVGSCN-CLPDCTATFYSSIKSTSAIRPCDSKNLNQSPMCDLEDPVL--PNIYGNEINKTYQELVEGAPAYLKNKLGSARYYYKTTTLRNMEIFSELKQDMSSYDAFSKDVSTVTVYFAQPTALQYERIEFKTALSFLSDIGGNFGLFLGFSFLSFLELIYWFIYRFTCN 790
BLAST of sodium channel protein nach vs. nr
Match: gi|1325268174|ref|XP_023344754.1| (glycine receptor subunit alpha-1-like [Eurytemora affinis]) HSP 1 Score: 280.026 bits (715), Expect = 2.347e-80 Identity = 139/249 (55.82%), Postives = 179/249 (71.89%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSM-DSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTH--LGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG---LWWGKFQTLAFVSSTCSGRYPAS 244 I I I+D+L IND+++S FS YFNV W+EPRLH+ + +M +S + PV++ LV+ LWLPNV+IYNLKTFKV++VLSK AGLW+ KE+MYSQA+ I ICPM F+ FPLDTQ CKFQVGSYSY KMIF T+ GY T+ ++VLDY ++ + L +D I D G LGN+S+AGFEM L+RHVSHY+I YYLPSGLFVVVSWISF+VP ++IPG L F L + +T + P + Sbjct: 61 IGIDITDVLRINDKEYSVEFSCYFNVMWKEPRLHIPEQLLEELNMKNSDAMFPVNVELVNLLWLPNVYIYNLKTFKVVEVLSKHAGLWITRNKEVMYSQATHINFICPMRFDTFPLDTQACKFQVGSYSYEHSKMIFTQTNKVQGYVKTANSVVLDYAVKTEPLKGEDLILDYGDLGNFSVAGFEMDLHRHVSHYLITYYLPSGLFVVVSWISFVVPPDVIPGRMALLITLFLVLVNIFNTVTSNTPKA 309
BLAST of sodium channel protein nach vs. nr
Match: gi|1325270297|ref|XP_023319726.1| (gamma-aminobutyric acid receptor subunit rho-1-like [Eurytemora affinis]) HSP 1 Score: 271.937 bits (694), Expect = 1.678e-77 Identity = 129/223 (57.85%), Postives = 170/223 (76.23%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRA---IVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 + I I ++L+IND+D+S TFS YFNV+W E RL+++PS+ NS+M Q P+ L V DLW+PN+FIYNLKT+KVI+VLSKLAGLW++ +MYS A+ IT ICPM F+ FPLDTQ CKF+VGSYSY + +M FE GY+ +++ I LDY+I++ L E D++ G LGN+SL+GFEMVL R+VS YII YYLPSGLFV+VSWISFL+P ++IPG Sbjct: 58 VTIDIEEVLKINDKDYSITFSTYFNVEWIERRLYIDPSYANNSNM--PQNIPMTLEFVKDLWVPNIFIYNLKTYKVINVLSKLAGLWIDTSGNVMYSHATHITFICPMRFDKFPLDTQRCKFKVGSYSYVISQMFFETKKAGYSDDTKSANRIALDYEIEILPLDEADKVIVFGDLGNFSLSGFEMVLTRYVSTYIITYYLPSGLFVIVSWISFLIPMDVIPG 278
BLAST of sodium channel protein nach vs. nr
Match: gi|1325296680|ref|XP_023331019.1| (gamma-aminobutyric acid receptor subunit rho-1-like isoform X1 [Eurytemora affinis] >gi|1325296684|ref|XP_023331020.1| gamma-aminobutyric acid receptor subunit rho-1-like isoform X1 [Eurytemora affinis] >gi|1325296688|ref|XP_023331021.1| gamma-aminobutyric acid receptor subunit rho-1-like isoform X1 [Eurytemora affinis] >gi|1325296693|ref|XP_023331022.1| gamma-aminobutyric acid receptor subunit rho-1-like isoform X1 [Eurytemora affinis]) HSP 1 Score: 268.085 bits (684), Expect = 3.815e-77 Identity = 134/225 (59.56%), Postives = 162/225 (72.00%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSM---DSAQLN-PVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSR-AIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 I I I ++L IND+D+S TFS YFNV+W E RL + + S LN P++L V DLWLPN+FIYNLKTFKVIDVLSK+AGLW+N K+I+YSQ + IT ICPM F+ FPLDTQ CKFQVGSYSY+ KM+F Y R I LDYDI+++ L D I D G LGN+SL+GFEMVL R+VS YII YYLPSGLFV+VSWISFL+P ++IPG Sbjct: 55 IGIDIDEVLRINDKDYSITFSTYFNVEWVERRLTVRKDWLDQMGHIENSSEPLNMPMNLEFVKDLWLPNIFIYNLKTFKVIDVLSKMAGLWINTNKKILYSQQTHITFICPMRFDKFPLDTQRCKFQVGSYSYDDSKMMFITQSAQYQKNGRNTIALDYDIEIEPLQPLDMILDYGNLGNFSLSGFEMVLTRYVSTYIITYYLPSGLFVIVSWISFLIPMDVIPG 279
BLAST of sodium channel protein nach vs. nr
Match: gi|1325296697|ref|XP_023331023.1| (gamma-aminobutyric acid receptor subunit rho-1-like isoform X2 [Eurytemora affinis]) HSP 1 Score: 267.7 bits (683), Expect = 5.619e-77 Identity = 134/225 (59.56%), Postives = 162/225 (72.00%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSM---DSAQLN-PVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSR-AIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 I I I ++L IND+D+S TFS YFNV+W E RL + + S LN P++L V DLWLPN+FIYNLKTFKVIDVLSK+AGLW+N K+I+YSQ + IT ICPM F+ FPLDTQ CKFQVGSYSY+ KM+F Y R I LDYDI+++ L D I D G LGN+SL+GFEMVL R+VS YII YYLPSGLFV+VSWISFL+P ++IPG Sbjct: 55 IGIDIDEVLRINDKDYSITFSTYFNVEWVERRLTVRKDWLDQMGHIENSSEPLNMPMNLEFVKDLWLPNIFIYNLKTFKVIDVLSKMAGLWINTNKKILYSQQTHITFICPMRFDKFPLDTQRCKFQVGSYSYDDSKMMFITQSAQYQKNGRNTIALDYDIEIEPLQPLDMILDYGNLGNFSLSGFEMVLTRYVSTYIITYYLPSGLFVIVSWISFLIPMDVIPG 279
BLAST of sodium channel protein nach vs. nr
Match: gi|1325296701|ref|XP_023331024.1| (gamma-aminobutyric acid receptor subunit rho-1-like isoform X3 [Eurytemora affinis]) HSP 1 Score: 263.848 bits (673), Expect = 1.469e-75 Identity = 131/225 (58.22%), Postives = 160/225 (71.11%), Query Frame = 0 Query: 2 IEIHISDILEINDRDFSFTFSLYFNVQWREPRLHLNPSFFQNSSM---DSAQLN-PVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSR-AIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 I I I ++L IND+D+S TFS YFNV+W E RL + + S LN P++L + DLWLPN+ IY LKTFKVIDVLSK+AGLW+N K+I+YSQ + IT ICPM F+ FPLDTQ CKFQVGSYSY+ KM+F Y R I LDYDI+++ L D I D G LGN+SL+GFEMVL R+VS YII YYLPSGLFV+VSWISFL+P ++IPG Sbjct: 55 IGIDIDEVLRINDKDYSITFSTYFNVEWVERRLTVRKDWLDQMGHIENSSEPLNMPMNLEFIKDLWLPNILIYKLKTFKVIDVLSKMAGLWINTNKKILYSQQTHITFICPMRFDKFPLDTQRCKFQVGSYSYDDSKMMFITQSAQYQKNGRNTIALDYDIEIEPLQPLDMILDYGNLGNFSLSGFEMVLTRYVSTYIITYYLPSGLFVIVSWISFLIPMDVIPG 279
BLAST of sodium channel protein nach vs. nr
Match: gi|1325310206|ref|XP_023336705.1| (uncharacterized protein LOC111707783 [Eurytemora affinis]) HSP 1 Score: 277.33 bits (708), Expect = 2.267e-75 Identity = 151/421 (35.87%), Postives = 227/421 (53.92%), Query Frame = 0 Query: 730 LPCQDAEKGSLICVVDDDVVA-------------QSKTPSKPMPKLEKVP----------PIVDKFLDPIKR---ESLLQDIAAKRNLSLSNFKNLNLTATYRDLFEILWYSQLPCFDVQGTTSRVKDEKSMVKRCFWKGFLINCALIFNTFPTDHGMCCTFNMKKAEEMFQSNRYSRMVTRMQENDFIASFGNPNLPAWYKDQNEPNSKAGKYKGLTLILDAHTDIVSPGTVSADFQGFYALVEENSQFPLVKERSFLIQPGHTTNVALSATGIVASSGIKNVSPLKRNCYFPDEY-----------------------------------FPTTDDKARPCDPWLTKEFLRHM-EQIPDSTCSYCLPDCEGTVYETSVTCAPFRRCDVKNLGTSPLCSLDTAMITNPPIWSKEVNRDYQ 1088 +PC A K +IC D V +S T S + + ++P P D FL+P KR E + + ++ K + FK++NLT ++ +F++LW+S PCFD++ TS +DEKS +KRC+WKG +NC IF T PTD GMCCTFN + AE++++ ++R V Q+ + + SF NLP ++ EP + GK +GLT+++D+H +I+SPGTV DF+GF ++V ++FP + E+ F+I+PGH VA+ A +A I+ + KRNCYF DEY +PT D K CDPW T F++ + +C+YCLPDC T Y +SV+ P RRCD KN+G S LC T + +P +WS++V +Y+ Sbjct: 331 MPCDGAAK--VICTADATAVRRRRKAEILDLAKNESDTDSYFIQEESEIPESRVRREVKAPKFDVFLNPEKRPAQEEIEKRLSQKFK---AVFKSMNLTHSFPSIFQMLWHSINPCFDIRKWTSDYRDEKSTIKRCWWKGVPVNCTAIFKTNPTDRGMCCTFNARAAEDIYKDTMFTRSVAATQKMNLLNSFEEANLPPGFESGEEPTPEIGKNRGLTIMVDSHANILSPGTVGDDFEGFLSVVNSPAKFPSITEKGFVIRPGHENLVAMGAVDTIADDSIRGIPASKRNCYFQDEYPLSMHKLYSQSGCVFECLLEFGKSLPTSGGCTPWFYPTRDTKM--CDPWQTNAFIKGIFGGAASRSCNYCLPDCASTTYSSSVSATPLRRCDTKNIGLSLLCKF-TDDLPHPKMWSEQVVAEYK 743 HSP 2 Score: 118.242 bits (295), Expect = 3.528e-23 Identity = 62/168 (36.90%), Postives = 95/168 (56.55%), Query Frame = 0 Query: 472 TVREYAETSTTHGISYVFEDDQPMFERILWLIITAVCVTIAITLSILAYLDWQDNPVVTFVSTTALPIENITFPAVTICGQGLIQEVVSAAIMKKF-GYFVDSK---GKSLSDMTSAEKSNLYEMYLEEKFNGLDP--KDIIFSMALPDPDAAAATAVLSAQVHDPVA 633 T+++Y E+STTHGI Y+ E Q R+LW +I + + A LS AY WQ++P++T VSTTALPI +++PA+T+CGQG+ + + + ++F Y VD+ S+ +T AE+ E + +E F GL D+ M P+P AA +S D A Sbjct: 7 TIQDYGESSTTHGIKYIVERRQVFVHRVLWFLIVGLAILFAAYLSNNAYNSWQNDPIITTVSTTALPINTLSYPAITVCGQGMATDTLEKVLEEQFQQYLVDAGVNINGSVEKITPAEQKEWRERHQKESFPGLTVPLADVASLMTAPNPAAALGAKAVSVAADDARA 174
BLAST of sodium channel protein nach vs. nr
Match: gi|1325329863|ref|XP_023346796.1| (glycine receptor subunit alpha-2-like isoform X1 [Eurytemora affinis]) HSP 1 Score: 234.187 bits (596), Expect = 1.592e-65 Identity = 111/170 (65.29%), Postives = 132/170 (77.65%), Query Frame = 0 Query: 53 PVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSR-AIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 P++L V DLWLPN+FIYNLKTFKVIDVLSK+AGLW+N K+I+YSQ + IT ICPM F+ FPLDTQ CKFQVGSYSY+ KM+F Y R I LDYDI+++ L D I D G LGN+SL+GFEMVL R+VS YII YYLPSGLFV+VSWISFL+P ++IPG Sbjct: 2 PMNLEFVKDLWLPNIFIYNLKTFKVIDVLSKMAGLWINTNKKILYSQQTHITFICPMRFDKFPLDTQRCKFQVGSYSYDDSKMMFITQSAQYQKNGRNTIALDYDIEIEPLQPLDMILDYGNLGNFSLSGFEMVLTRYVSTYIITYYLPSGLFVIVSWISFLIPMDVIPG 171
BLAST of sodium channel protein nach vs. nr
Match: gi|1325329865|ref|XP_023346797.1| (glycine receptor subunit alpha-2-like isoform X2 [Eurytemora affinis]) HSP 1 Score: 234.187 bits (596), Expect = 1.612e-65 Identity = 111/170 (65.29%), Postives = 132/170 (77.65%), Query Frame = 0 Query: 53 PVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSR-AIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPG 221 P++L V DLWLPN+FIYNLKTFKVIDVLSK+AGLW+N K+I+YSQ + IT ICPM F+ FPLDTQ CKFQVGSYSY+ KM+F Y R I LDYDI+++ L D I D G LGN+SL+GFEMVL R+VS YII YYLPSGLFV+VSWISFL+P ++IPG Sbjct: 2 PMNLEFVKDLWLPNIFIYNLKTFKVIDVLSKMAGLWINTNKKILYSQQTHITFICPMRFDKFPLDTQRCKFQVGSYSYDDSKMMFITQSAQYQKNGRNTIALDYDIEIEPLQPLDMILDYGNLGNFSLSGFEMVLTRYVSTYIITYYLPSGLFVIVSWISFLIPMDVIPG 171
BLAST of sodium channel protein nach vs. nr
Match: gi|1325286500|ref|XP_023327977.1| (glycine receptor subunit alpha-1-like [Eurytemora affinis]) HSP 1 Score: 226.483 bits (576), Expect = 5.040e-65 Identity = 101/127 (79.53%), Postives = 118/127 (92.91%), Query Frame = 0 Query: 96 MYSQASQITIICPMIFNYFPLDTQVCKFQVGSYSYNMEKMIFEVTHLGYAHTSRAIVLDYDIQVQSLPEQDRIFDSGPLGNYSLAGFEMVLNRHVSHYIINYYLPSGLFVVVSWISFLVPSEIIPGL 222 MYSQASQIT ICPMIFNYFPLDTQVCKFQVGSYSYNM+KM+F+V+ LGYAHTSR+IVLDYDI+++ L E+D++F G LGN+SLAGFEM+L RHVSHYII YYLPSGLFVVVSWISFLVP+++IPG+ Sbjct: 1 MYSQASQITFICPMIFNYFPLDTQVCKFQVGSYSYNMDKMVFQVSQLGYAHTSRSIVLDYDIRIKPLDEKDKVFQGGALGNFSLAGFEMILTRHVSHYIITYYLPSGLFVVVSWISFLVPTDVIPGI 127 The following BLAST results are available for this feature:
BLAST of sodium channel protein nach vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of sodium channel protein nach vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of sodium channel protein nach vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold137_size321222:226318..250172+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold137_size321222-snap-gene-2.20 ID=maker-scaffold137_size321222-snap-gene-2.20|Name=sodium channel protein nach|organism=Tigriopus kingsejongensis|type=gene|length=23855bp|location=Sequence derived from alignment at scaffold137_size321222:226318..250172+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'sodium channel protein nach' has the following synonyms
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