kelch domain protein, maker-scaffold1129_size60621-snap-gene-0.11 (gene) Tigriopus kingsejongensis

Overview
Namekelch domain protein
Unique Namemaker-scaffold1129_size60621-snap-gene-0.11
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of kelch domain protein vs. L. salmonis genes
Match: EMLSAG00000004902 (supercontig:LSalAtl2s:LSalAtl2s257:418585:456624:1 gene:EMLSAG00000004902 transcript:EMLSAT00000004902 description:"maker-LSalAtl2s257-snap-gene-3.49")

HSP 1 Score: 68.5514 bits (166), Expect = 5.990e-13
Identity = 74/314 (23.57%), Postives = 133/314 (42.36%), Query Frame = 0 
Query:   21 VLVTTGYNHQNGSVSTSEIVDLTSGPICG-PIADYPLKVKGAVGFVLSGTPTVCGGFDASSREFIDTCFQYERSTNTWLPFATLDKHRYASASVPISGDEIWITGGTSYDGDVDQVDGLVPGYIETTEILSSDGTTRPGIDLPMGSHSHCMVQVEDYVYLFGGEVTYSSRAN--YRIALSDLESGSWEALEDMDYKRYGHTCHVY----RDERGQAAIVVVGGDGYGTSETLNVEHL---QWTPGPNILRPLFYAQSVTYLNTFFLLGGSGYSFTYWADILE-YQPQS--WVPRGNLSLETLRREFVAISVPDD 321
             ++  G+N ++G +   EI      P     +A  P   KG V   + G+   CGG++ ++   ++ C+++    N W      +  R+ + SV ISG + ++ GG   DG  + V     G +E  +         P + L +    HC + +     +  G  +++S  N       S++E G W  L+ M+  RY H+C V      D      I+V GG       +  +      +W     ++ P   A  +  LN    + G  +S   + D++E Y  +S  WVP     ++T RR F A+ +P++
Sbjct:  574 AMLIGGWNPESGLLKNVEIYSPQQHPCSNINVAPLPAPRKGLVANWIDGSVIACGGYNQTA--VLNVCWKFVPELNDWKEIRPTEIERHFATSV-ISGGDFYVLGGR--DGKEEPV---ALGAVERLKSEERTWELIPEMKLSIERAYHCSIPLSHNSIVLTGGYSWNSILNDVELFNTSEMERG-WTKLKGMNTPRYLHSCGVVPNSEDDHNNNPQIIVAGGYSSEYLSSSEIYDFNTGEWRDTGPMMEPRQGAHMLV-LNGRPTVIGGFHSTDRYPDVVEQYDLKSGRWVPVSQ-RIKTRRRYFAAVEIPEN 876
[Close]
BLAST of kelch domain protein vs. L. salmonis genes
Match: EMLSAG00000007166 (supercontig:LSalAtl2s:LSalAtl2s403:189750:191334:-1 gene:EMLSAG00000007166 transcript:EMLSAT00000007166 description:"maker-LSalAtl2s403-snap-gene-2.29")

HSP 1 Score: 60.8474 bits (146), Expect = 1.240e-10
Identity = 73/321 (22.74%), Postives = 124/321 (38.63%), Query Frame = 0 
Query:   18 SAKVLVTTGYNHQNGSVSTSEIVDLTS-GPICGPIADYPLKVKGAVGFVLSGTPTVCG----GFDASSREFIDTCFQYERSTNTWLPFA-TLDKHRYASASVPISGDEIWITGGTSYDGDVDQVDGLVPGYIETTEILSSDGTTRPGIDLPMGSHSHCMVQVEDYVYLFGGEVTYSSRANYRIALSDLESGSWEALEDMDYKRYGHTCHVYRDERGQAAIVVVGGDGYGTSETLNVEHLQ-------WTPGPNILRPLFYAQSVTYLNTFFLL--GG---SGYSFTYWADILEYQPQSWVPRGNLSLETLRREFVAISVPD 320
            S K+L+  GY+ +  +    EIVDL +    C     +   +      V    P +CG     F    R ++        ST  W  F    ++  + +    I G   W+    +                +T  ++  +  T PG  LP      CMVQ+ D+  +  G     S  + +  + +  +  W    D+   R GH C +Y+++     IVV GG+  G   T   E L        W  GP++  P+  A ++  +N F L+  GG      S +Y   + ++Q   W+ R    L+  R +  A+ +PD
Sbjct:  181 STKILIAGGYSQEGDA--KPEIVDLENPNYKCFLEESHKRNIVIKATLVNESFPLLCGYGLNFFKGGCRMYL--------STGEWKFFPDVFNRAIHGTGEAFIPGKGWWVPTSET----------------DTEIVMLPNIKTNPGPQLPTVLEQQCMVQINDFETMVIGGRRIQSPNSAKTWIFNWSTKEWRFGPDLKDGRTGHACGLYKNK----YIVVGGGNTLGKGTTNKTEILDLTAIWKGWIKGPDLPCPITDA-AIVQINDFNLIIVGGQENKKNSNSYVNALYQFQLDGWI-RLTTRLQMPRSQHTAVWIPD 469
[Close]
BLAST of kelch domain protein vs. L. salmonis genes
Match: EMLSAG00000008643 (supercontig:LSalAtl2s:LSalAtl2s534:149747:152503:1 gene:EMLSAG00000008643 transcript:EMLSAT00000008643 description:"maker-LSalAtl2s534-augustus-gene-1.30")

HSP 1 Score: 50.8322 bits (120), Expect = 2.957e-7
Identity = 56/209 (26.79%), Postives = 88/209 (42.11%), Query Frame = 0 
Query:   35 STSEIVDLTSGPICGPIA-DYPLKVKGAVGFVLSGTPTVCGGFDASSREFIDTCFQYERSTNTWLPFATLDKHRYASASVPISGDEIWITGGTSYDGDVDQVDGLVPGYIETTEILSSDGTTRPGIDLPMGSHSHCMVQVE--DYVYLFGGEV--TYSSRANYRIALSDLESGSWEALEDMDYKRYGHTCHVYRDERGQAAIVVVGGDG 238
            S++EIV   SG +C   + D  +   GA    +S    +CGG D +S+   D C  Y   +  W   + L+  R  +AS  +    ++I GG   D    +  G++       E LS+         LP      C V ++  + + + GGE      + A   + + + E+G W    DM   R  H C V  D +G   I+V GG G
Sbjct:  246 SSTEIV--KSGAVCKKTSNDTSMGRAGAXADYVSEGILLCGGRDLNSQVKKD-CRLYGVVSGLWSDHSELNFPREEAASATLMDKNMYILGGIIED----ERTGII-------EKLSNGSWVEESARLPEPRSRFCAVALDSANVIAILGGETGDEEETLATRDMKIYNTETGDWTNQPDMPIGRKDHAC-VVADFKGNTGILVSGGVG 439
[Close]
BLAST of kelch domain protein vs. L. salmonis genes
Match: EMLSAG00000004980 (supercontig:LSalAtl2s:LSalAtl2s260:1513883:1516857:-1 gene:EMLSAG00000004980 transcript:EMLSAT00000004980 description:"maker-LSalAtl2s260-augustus-gene-14.35")

HSP 1 Score: 49.2914 bits (116), Expect = 6.501e-7
Identity = 61/242 (25.21%), Postives = 104/242 (42.98%), Query Frame = 0 
Query:   15 LGHSAKVLVTTGYNHQNGS-VSTSEIVDL-----TSGPICGPIADYPLKVKGAVGFV-LSGTPTVCGGFDASSREFIDTCFQYERSTNTW------LPFATLDKHRYASASVPISGDEIWITGGTSYDGDVDQVDGLVPGYIETTEILSSDGTT-RPGIDLPMGSHSHCMVQVEDYVYLFGGEVTYSSRANYR-IALSDLESGSWEALEDMDYKRYGHTCHVYRDERGQAAIVVVGGDGYGT 241
            + +++ V +  G + +NG+ V   E+ D       +  +  PI    +K K A  F+    T   CGG  A  + F  +C  Y+ +   W      +P  T  +  +   ++  +  EI+  GG  Y+G+           I++ EI +      R G  L     +HC ++V+D +Y+ GG+   +S    R +A  ++ SG+W     M+  R  H C  Y   RG   I+V GG  Y  
Sbjct:  107 IKNTSYVTLVIGGDDRNGNPVGEVEVFDFLGCCEKANFMKNPIRKDIIKKKHASSFINYLNTIISCGGXSAX-QPFSASCLIYDFNKLHWYNDTRVIPDMTEARSYF---TMEYAYGEIYAMGG--YNGE---------EIIKSVEIYNPITREWRQGPSLSKRLSNHCALKVKDSIYVIGGQRRLNSSETERFVARYNVTSGTWSPFTPMNLPRMNHGC-AYDATRG--VIIVSGGQIYSN 330
[Close]
BLAST of kelch domain protein vs. nr
Match: gi|1325327448|ref|XP_023345578.1| (uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 65.4698 bits (158), Expect = 5.635e-8
Identity = 50/207 (24.15%), Postives = 88/207 (42.51%), Query Frame = 0 
Query:   55 PLKVKGAVGFVLSGTPTVCGGFDASSREFIDTCFQYERSTNTWLPFATLDKHRYASASVPISGDEIWITGGTSYDGDVDQVDGLVPGYIETTEILSSDGTTRPGIDLPMGSHSHCMVQVEDYVYLFGGEVTYSSRANYRIALS---DLESGSWEALEDMDYKRYGHTCHVYRDERGQAAIVVVGGDGYGTSETLNVEHL------QW 252
            PL +   +   +  +  VCGG  +      D C+ Y++    W     + +    SA V I     ++ G T++  ++  +              S+  T   G+ L +G  +HC V  +  + + GG++T S   +  I+     D +  SW +L  M  KR  H C +Y +  G+  +VV+GG G      ++VE+L      QW
Sbjct: 3476 PLGIYDHMTSYVDNSLLVCGG-HSRPNLISDMCYSYKKPDLEWKQVENMPEKAMNSAKVTIGTKVYFLGGWTNHPSNLSFIYD------------SATSTWSEGVKLTLGRTNHCAVTFKGKIIITGGKITQSGSGSSHISTVEEFDPDKSSWTSLPSMQLKRESHGCSLY-NLAGKNVLVVIGGTGEHNDTEISVEYLDLDAPTQW 3668
The following BLAST results are available for this feature:
BLAST of kelch domain protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAG000000049025.990e-1323.57supercontig:LSalAtl2s:LSalAtl2s257:418585:456624:1... [more]
EMLSAG000000071661.240e-1022.74supercontig:LSalAtl2s:LSalAtl2s403:189750:191334:-... [more]
EMLSAG000000086432.957e-726.79supercontig:LSalAtl2s:LSalAtl2s534:149747:152503:1... [more]
EMLSAG000000049806.501e-725.21supercontig:LSalAtl2s:LSalAtl2s260:1513883:1516857... [more]
back to top
BLAST of kelch domain protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of kelch domain protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325327448|ref|XP_023345578.1|5.635e-824.15uncharacterized threonine-rich GPI-anchored glycop... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1129_size60621supercontigscaffold1129_size60621:8220..13513 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1129_size60621-snap-gene-0.11-mRNA-1maker-scaffold1129_size60621-snap-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1129_size60621:8220..13513+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1129_size60621-snap-gene-0.11 ID=maker-scaffold1129_size60621-snap-gene-0.11|Name=kelch domain protein|organism=Tigriopus kingsejongensis|type=gene|length=5294bp|location=Sequence derived from alignment at scaffold1129_size60621:8220..13513+ (Tigriopus kingsejongensis)
CAAGGATCTTGGAGGATGAAGGGCATGTGCATGTCTCTCCTCCTATTGTT
GCTCCCGTTGGGACACTCCGCCAAAGTTTTGGTGACCACGGGCTACAACC
ATCAAAATGGGAGCGTGTCCACCTCGGAGATCGTCGATCTCACCTCGGGT
CCAATCTGTGGTCCCATTGCCGACTATCCGCTCAAGGTGAAAGGAGCCGT
TGGTTTCGTCCTGAGTGGAACACCGACTGTTTGCGGTGGTTTTGACGCCA
GTTCGAGGGAGTTCATCGACACATGCTTCCAATATGAAAGATCTACCAAT
ACCTGGCTCCCTTTCGCCACTTTGGACAAGCACCGCTATGCCTCGGCGAG
TGTGCCCATCTCTGGGGACGAGGTTGGTCCCCCCAAACGAGGGATTTATG
AGCTCGAGCTGATTATGAGCGCATCCTTCATCGTCTCGGGCTAGATTTGG
ATCACGGGTGGAACCAGCTATGATGGAGATGTGGACCAAGTTGATGGATT
GGTCCCAGGATACATCGAAACAACTGAAATCCTCTCATCCGATGGAACCA
CCCGACCGGGGATTGATCTGCCCATGGGCTCTCACAGTCATTGCATGGTC
CAAGTGGAAGATTACGTGTACCTTTTCGGCGGCGAAGTGACCTATTGTAA
GTTAAATTGGCCAGGTTCAATTCCAATGATCGACCATTAGCGTCCCTAGG
GAAAAGGTCGCCTTACGGGCGTTTTTTTTACAGTTCCTGTGGAAGGCTTT
GTGCGTCCTTTGGTCGAGTTTCGCTTCTCGCCTTTTGAACTTCTTGCCCG
TCGTGTCCTAGCGAAACTTGGCGCCCAGAGAGCCGAAAATGATTGAGAAT
ACAATTTAAGATGATAGCTCTACAAACTTATAAAACAAGGAGTGTTGGGT
GCACCTCGGTCGTGGTCTGGAGGTTCTCTGAAAAAAATAGCTCACTTTAT
TAACGCCGATCCCGAGACAAATTTGCAGCAGACAACAAACATACATTCAA
ACCAGCAAACAACCAAGCAAACAAACAGTCAGGCAAAAGGACTTTAAAGT
TCCTGAATGGTTGACGATTAGAAACTTGTAAAATCAGTGTTTGAACTGAA
ATAAAGGGAAAACGTTTTTTTTTCTTTTTCAAAAAAGTGACTTTTTTACC
TTCATGTTTTACAAGAAACAGAAGAGATCAATTCCGGAAGAAGATTTGAA
GAATTAAATAAGATTTATACCTTATTGCGGGAGCGGTGTGTAAAAAAATA
TGCAAACAAATTGCTCAACCATATTTTTAGAAGAAACAATCATTCCAAGC
TTGAGCGGAAATAACCTAACAAACAAACAAGCTCTAAGTATCAGTAAAGT
TAAATAGGGCATAAAAGAAAAAAAGCAGACTTATGCTTTCAAAAAATCTT
GAAAAAATCGTAAAAGTAGTCGAAATTTGGCCCCCCAAAAATGACCATAA
GTGTTCAATATTGGGATAAATGCCAAAACACATATTTTGTTCAAACCAGG
ATGCAAGTTTTCCCCCGTTTTTCGAGGTCTGATGATAAATCCATGAGTGA
TTATAAATCTTACATCGCACCCAAATCTCGTGGACGTCACTTTGCCCAAA
TATGGCTAAAATTGGATGGTTGTAATTAATTATAACTTGCTCAAACATTT
CTGACACAATTTAACTTGTTTTTTAACTTTTTAATTTTCTTCTTTGTCGC
TAAAAATCCAAGAGTGAAGGACAGCATATTACCAGAGGGGTCAAAAAATG
TGGTCCATTTGGACCACACTCATTGCAATGGTTTGGTACTCTGATCGCAA
ATCCTCGGCCAAGCTTATGGTTGAATTGAAAAAGGCTAATGTACAGAGTG
CGTCAGGAAAACTTGCCGCAAATAGTTTGAGGTCTAGAATTCAAAATTAA
GGAGGAACTGAAGGCTGCATCTCATTTAATTAGTCTTTTATAAATAAAAT
TGCCACGAATCCTGAGTATCTTAACACTGAATCGTGTTTCTGGCCTTCAC
ACTGGACCTAAGTGTGGCTCCAATTTGGGGATGAATTTGTTTCCAGTGCT
TCCACCATATAAGGAGTGAATGGCTCCAAACTTCTCCAGGAGTTGAAGTT
GGATTCACATCATATTACGCATAAGGTGTCACCCCCAAATTGGTTTCAAT
TCCAGATCATTGGTGGTCAAAACGAGCTGCACTCAAGTTCTACTTCTTCA
ATGATGCCCTCAAAATGGTAATTTTCTGTCACCCAAATGCCACAAAATAC
ATTTCTTTGCTCAATACGGGTTAGGGTCGCTTGCACTCAATGTTGGAGGG
ATTTACCAAAAGACGGCCTTAAACTCTGCATTTATACTAATATAAAGCAC
GCTAGATGGCCACAGATCGACCTTCGTCCAGGGTGGCGATAAATATCATA
TTTGCGCTTCAGACGAATTAGCTAGGTCGGAAAAAATATATTTTTTTTGT
CGTATTTGACACCCAGTAATCACGCCATGGGGTGGTTATACAATATTGAG
TTTGGAATTTATTCAGAAGCACTAGCAGCATTCATAGCTGGCAGTTTACA
GTGTAGTATTTTGCAAAAACTGTGGTTGGGTCACCCCTGGGATCGCATTG
TTTCGTCTAAAGTTAAAACAGTAGCTAATCTGAGTAATTTATGAAGAAAG
TTTAAACCTTTGAAATGCGCAGTCTGCCGAGTCTTAACGTGCTTATTGTC
TGGGGCCTGCACAAGATGAAGGGGACGACTGGACAAGAACCCATGATCAT
ATTGTTCAATAGTAGTTTATTCAAACATGTTCGAGATCGGAAAAGAGGAG
AGCGAGCCAAGTAATATCCACCCATCAGCAACTTGAGACCCAGAGGAGCC
AACCGCGACGCGAGACAGTCCCAACATTCTCCATCCATCCCACCGAGACT
CTGGCTGGGGCACCTGCCCTCAACCCACCAGCGCCGGATCCACCCCGATC
ACCCCCTTGAAAACTTGTTCAACTAGACCCTGCTTTCATACTGTCAATGC
CGCTTTGCTCCCAGAGACCACCCCCTTCCTCCGAATACAGGTCATTTCTA
CCCACCCAACCGGTCGATGGTGACCCGGATCGTTTCTGCCCGAGGATGAC
TCAAAATTCTAAGTTCTTCTATGTACATCCAGATGCGAAAAACACGGACG
TGATAAAACAACTATCATGGTTCTTGAGCATTGATCAACCATCTCAAACC
TTAATCGCATTTACTTTGACTTGGATCCGAACCTGTGTGCTTACATAATC
TTCGATCTTCGATCTCTGTTTTTTAAGTTAACCAAAATGTTTTATTAGCC
CCCTGGGATTATAGTGTCGATAAGAACGGTGTTTGGCACTCGTAGTTCAA
AGCCATGAATACATGTTATTTTCCTAATCATATTGTTCCTGTCCTTATGA
TTTCTATGAGATGGTTTGCCTCTTGTCTTGCTTTTCTAAGAGCCGTTTCC
TTATAGTTCTGATCGCATTATTTGCGTTTCTCTAATATTCTTCTCCAGCG
TTTCCGTTTTGTATATCGGTAGTTCCGTTCTGTCTTATATAGTTTTGTTT
TGATATAGTTCAGCATGTAAACTTGGTTATGGATACAATTTCGTTTTAGC
ACAGTAACGGTTTTGTATTGTTTGGTTACATTTCGCTTTCCATAGGTTCT
TTTTTGAAATGCCCTAACACAAGCGACTTGCACTTGTTAGCTTAGTGTTG
ACTCCCTGGCATGTACAGTAGTTCTGTCTACATATACGTAGAAATACAGT
TTGATGTCACACACACAAAATATCGAGCGAAATTATCAACTCGCAAAATA
TCCCTAAGCATGCATGCCCAGGTTGAACATATGGGTCATGCCCACGGAAA
TGTGTCATAGCTAATTTCGCATACCAGTCATTAATCACTAATCTCGATAA
ACCTGAATTGTGACAGGTGGAAAGTCTGCAAACAACTCTTATTACCCGAC
TCAATTCTAAACAGTTTTCCATGACCTATTCATATTGAAATACGTATATC
CTCTGGCCACAAAAATGAGCAAAGAGGAGGGTTTTAGAAATGTTTTGCAA
GTGATTTACCGACACAAAAAAGGTTTCATGTAGAAAAATAGATCGGCATT
AATCTCAGCTTCAATAATATGCCATTTTATTTAACCTTGTTTAGCGCAAT
TTTGGGAAACTTACAATTTTTGACGGAAATCGACATGCCACAGTGCTAAG
GGCTTCGTCAAATGTCCCCATTTTTTGAAAAAAAGACGCGGGAAAAGATG
TGACGTCAGCGGCCCTAATCCTTATTCAGAAGAAACTCTCAGTCGTTCAT
TTTGCATGAAAATATGACCCACTTGGGTTGAGAAGCTACGGCTAATGACC
TAAGCCTCATTGAAAACTCGAAACGGCGTCTTCCGATAGTCCAAGACCAT
GAGACACACAGTCATAACTAGTCGCTCAGATTTATCATAGTATACCCTTT
AGGTCCCAGATGATACATTTGATAATAATTATTGGTCATTTTTAACAATG
GCCCTGGTTGACCATAGATTGACTCAAGCTTGAGTCGAATTCTGCTGTCG
GCGATTCTGAGTGATCGGACACTTGTGGGTTTTGTCACCAGATCTAAAGC
GCAGTAAAGCCTTGGTGGGTTACACATTCTACAGAATTTATCTCCTTGTC
TTTGAGATGATGAATAGCCACATGTACCACGACAGCGTACCTCTCATCAA
GCATTACATACATAGATAGATAGAGTGGCAATCAGCTTGAATAAAACTTC
AGTTTTCCCGACCATCAGCAGACTCGTCGCTGTGTAGCCGGCCTTTGAAT
TCGAAGACCGTCGGCTACTGCAGCATGTTCCGACCGAAATCCAATGGCCA
TCCCACCTTTTCTCTCCCTCAGCCAGCCGGGCCAATTATCGGATCGCTTT
GTCCGATTTGGAGAGCGGGTCGTGGGAGGCTCTGGAGGATATGGACTATA
AGCGATATGGTCACACCTGTCATGTCTACCGGGATGAGCGTGGCCAGGCG
GCGATTGTGGTGGTTGGCGGTGATGGATATGGCACATCAGAGACCCTGAA
TGTGGAACACTTGCAATGGACCCCCGGTCCCAATATCCTTCGACCCCTTT
TCTATGCCCAATCGGTGACCTATCTGAACACATTTTTCCTCCTGGGAGGA
TCGGGCTACAGCTTCACTTACTGGGCCGACATTCTGGAATACCAGCCCCA
ATCGTGGGTCCCAAGGGGGAATTTGAGCCTCGAAACCCTGCGCCGAGAGT
TTGTGGCCATCTCGGTGCCGGATGATTATTGCGTGGGAAAATGA
back to top
Synonyms
The feature 'kelch domain protein' has the following synonyms
Synonym
Tk11841
Add to Basket