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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR009071 | High mobility group box domain | SMART | SM00398 | hmgende2 | coord: 73..143
e-value: 8.3E-23
score: 91.8 |
| IPR009071 | High mobility group box domain | PFAM | PF00505 | HMG_box | coord: 74..142
e-value: 2.4E-22
score: 79.0 |
| IPR009071 | High mobility group box domain | PROSITE | PS50118 | HMG_BOX_2 | coord: 74..142
score: 20.989 |
| IPR036910 | High mobility group box domain superfamily | GENE3D | 1.10.30.10 | | coord: 71..152
e-value: 2.2E-27
score: 97.3 |
| IPR036910 | High mobility group box domain superfamily | SUPERFAMILY | 47095 | HMG-box | coord: 58..146 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 195..223 |
| None | No IPR available | PANTHER | PTHR10270:SF288 | SUBFAMILY NOT NAMED | coord: 43..182 |
| None | No IPR available | PANTHER | PTHR10270 | SOX TRANSCRIPTION FACTOR | coord: 43..182 |
| None | No IPR available | CDD | cd01388 | SOX-TCF_HMG-box | coord: 73..144
e-value: 9.05027E-33
score: 118.555 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk02028 ID=Tk02028|Name=Tk02028|organism=Tigriopus kingsejongensis|type=polypeptide|length=678bp
LERLYIGWKSVSHWEGIMAYLQAPKPASHLSPPLSSGAAKSKATVFGSLL
VDANSATPYTDATQQTKKNSPNHIKRPMNAFMVWSQFQRRKIIEIQPDIH
NAEISKNLGKRWKCMTQEERQPWILEAERLRILHSQEYPDYKYRPRKRNR
AQPSLSLGSVEELLLKKKEEEEDENSPTSPKVKCTQVQMQVTISRAGFSP
SPNRVPSSPASIPSSPESQSFYEDHQYQGLESHRPPNVYESVKEEENQNL
LDDLTRILQNHSNTAIFNDCTDLELGTSDGGYGSMEATPTEMEAQFQFHN
PSTNLFPQLEDSNYPLLDNAYTGFIGNYGMEAATNGNPATAALTTMQTTK
VECSRAKGIIRAPHVRRSIGLEKVRLTSGIEDEIPAHELIERIRTCVGKV
PSTCSHVRKVVQNDLDNHISHLVELDLGIEPDFLEMSGQGGYVGILHGVQ
ALERWRSLNFLEVVIAHHVGLGGPGVRTALKLTVLDVRHPQHPLAVDVHS
QGHHRGDENIDGQIEFDPVNQEWGIDHGLDHDIGQGRRFVPLQVHKADAG
MKCALLEEFDVRIRFVILFHGVLVSGKEESLGHEGISFGGEIGFHDNAIG
SRDLVESLMEAHGFKLSLDVVPMAMVGPDQIRLAHIRYQLEAEHSGQSQR
VLKLVFGTTDMEGAHVRACQNEYLGSDN back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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