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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 176..192 score: 54.34 coord: 225..233 score: 60.25 coord: 192..207 score: 63.24 coord: 233..241 score: 59.92 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | c4gold | coord: 173..244 e-value: 2.7E-38 score: 143.2 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 175..242 e-value: 1.7E-29 score: 102.0 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 176..202 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 173..248 score: 19.677 |
IPR003069 | Ecdysteroid receptor | PRINTS | PR01283 | ECDYSTEROIDR | coord: 242..251 score: 77.86 coord: 319..344 score: 47.25 coord: 538..556 score: 63.53 coord: 447..465 score: 52.63 coord: 519..536 score: 65.48 coord: 164..175 score: 83.33 |
IPR001723 | Nuclear hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 460..475 score: 34.61 coord: 237..247 score: 41.01 coord: 395..411 score: 46.07 coord: 374..395 score: 34.44 coord: 517..534 score: 36.67 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | SMART | SM00430 | holi | coord: 373..529 e-value: 6.4E-39 score: 145.3 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | PFAM | PF00104 | Hormone_recep | coord: 366..538 e-value: 9.6E-28 score: 97.0 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | PROSITE | PS51843 | NR_LBD | coord: 319..557 score: 48.716 |
None | No IPR available | GENE3D | 1.10.565.10 | | coord: 310..557 e-value: 2.2E-83 score: 281.3 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 42..69 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 23..147 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 23..41 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 73..105 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 114..147 |
None | No IPR available | PANTHER | PTHR24082:SF331 | NR1H3 PROTEIN | coord: 144..549 |
None | No IPR available | PANTHER | PTHR24082 | NUCLEAR HORMONE RECEPTOR | coord: 144..549 |
None | No IPR available | CDD | cd07161 | NR_DBD_EcR | coord: 173..263 e-value: 1.60378E-51 score: 169.287 |
None | No IPR available | CDD | cd06938 | NR_LBD_EcR | coord: 320..556 e-value: 1.7355E-128 score: 372.925 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 174..259 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 168..250 e-value: 9.4E-32 score: 111.0 |
IPR035500 | Nuclear hormone receptor-like domain superfamily | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 319..556 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk03534 ID=Tk03534|Name=Tk03534|organism=Tigriopus kingsejongensis|type=polypeptide|length=557bp MSSSAPQVTLLQARSQVKTYTTMTGGPPFNGGISTIMVNSPPGPGLSPPS PPNFFGLQPSPPSSVLSPPMPNQPIYVDTSSPSSHFQASSPQITEIKTEP PSSFSPPVNGYGHAPQRHNSSNSSVSSPSSQPGGFFVKSESNPPLTPNQA VQEYARLQENERKKKGPVPRPQEELCTVCGDRASGYHYNALACEGCKGFF RRSITKNSSYSCKYGDGCEIDMYMRRKCQACRLKKCYTVGMRAECVVPES QCQKKRAIKQAQKAAQNGDASSTTLMANNSSLSGGMGGRGTPLAIGGPGL SSNHNSIPSALAPRHLKPEEEELINRIVYYQDEFENPTAEDLNRVYHVPL HPVNNDATGNESESDRLFQHMTEMTILTVQLIVEFTKHLPGFPTLCREDQ VSLLKGCSSEVMMLRGARRYDPQRDSIIYATNYPFSKDNYVKAGLGNDAL FRFCRNMCKMKVDNAEYALITAIVIFSERHNVKEPKRVEKIQEIYVEALQ SYVMAKQKKEPMVAFAKLLSVLTELRSLGNNNAKTCFNLRMINRKLPAFL AEIWDIK back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
GO:0035076 | ecdysone receptor-mediated signaling pathway |
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
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