Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
transcription cofactor vestigial-like protein 2 isoform x1maker-scaffold757_size101632-snap-gene-0.25gene
transcription elongation factor b polypeptide 2maker-scaffold918_size81203-snap-gene-0.23gene
transcription elongation factor s-iimaker-scaffold158_size296719-snap-gene-1.16gene
transcription elongation mitochondrialmaker-scaffold12_size759060-snap-gene-5.15gene
transcription factormaker-scaffold308_size214241-snap-gene-1.47gene
transcription factormaker-scaffold1929_size24837-snap-gene-0.6gene
transcription factormaker-scaffold99_size374999-snap-gene-1.7gene
transcription factorsnap_masked-scaffold268_size230776-processed-gene-1.3gene
transcription factor 21snap_masked-scaffold232_size243569-processed-gene-1.1gene
transcription factor 23maker-scaffold1041_size68021-snap-gene-0.12gene
transcription factor 25maker-scaffold292_size219010-snap-gene-1.35gene
transcription factor 7 isoform x11snap_masked-scaffold228_size248166-processed-gene-1.20gene
transcription factor ap-2 epsilonmaker-scaffold606_size125303-snap-gene-0.22gene
transcription factor ap-2-epsilon-likemaker-scaffold60_size442463-snap-gene-2.11gene
transcription factor ap-4snap_masked-scaffold1122_size61463-processed-gene-0.8gene
transcription factor btf3 homolog 4snap_masked-scaffold478_size161223-processed-gene-0.0gene
transcription factor capicua isoform x2maker-scaffold580_size130538-snap-gene-0.21gene
transcription factor castormaker-scaffold146_size311726-snap-gene-2.24gene
transcription factor collier isoform x4maker-scaffold261_size233860-snap-gene-0.15gene
transcription factor dp-1-likesnap_masked-scaffold276_size226481-processed-gene-1.6gene
transcription factor e2f3maker-scaffold153_size302544-snap-gene-2.25gene
transcription factor e2f8maker-scaffold304_size215464-snap-gene-0.11gene
transcription factor gata-5maker-scaffold346_size200932-snap-gene-1.16gene
transcription factor glial cells missing partialmaker-scaffold292_size219010-snap-gene-0.21gene
transcription factor hamletmaker-scaffold2494_size15051-snap-gene-0.2gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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