Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
transcription factor hnf-4 homologmaker-scaffold1013_size70870-snap-gene-0.16gene
transcription factor ilr3-likemaker-scaffold890_size84715-snap-gene-0.8gene
transcription factor -likesnap_masked-scaffold838_size90379-processed-gene-0.6gene
transcription factor mafmaker-scaffold8735_size2626-snap-gene-0.1gene
transcription factor mafmaker-scaffold931_size79642-snap-gene-0.9gene
transcription factor partialmaker-scaffold1041_size68021-snap-gene-0.10gene
transcription factor partialsnap_masked-scaffold619_size123246-processed-gene-0.28gene
transcription factor rfx3maker-scaffold531_size145796-snap-gene-0.20gene
transcription factor sox-maker-scaffold517_size150149-snap-gene-0.18gene
transcription factor sox-snap_masked-scaffold74_size411160-processed-gene-3.0gene
transcription factor sox-11-asnap_masked-scaffold111_size354240-processed-gene-2.17gene
transcription factor sox-17-likemaker-scaffold517_size150149-snap-gene-0.17gene
transcription factor sox-2maker-scaffold892_size84543-snap-gene-0.19gene
transcription factor sox-21-asnap_masked-scaffold517_size150149-processed-gene-0.10gene
transcription factor sox- partialmaker-scaffold435_size171904-snap-gene-0.25gene
transcription factor sp4maker-scaffold170_size291898-snap-gene-1.50gene
transcription factor sp5-likesnap_masked-scaffold186_size273091-processed-gene-1.24gene
transcription factor unc-3maker-scaffold261_size233860-snap-gene-0.12gene
transcription factor with ap2 domainsnap_masked-scaffold29_size597861-processed-gene-4.20gene
transcription initiation factor tfiid subunit 10-like proteinsnap_masked-scaffold14_size734282-processed-gene-2.4gene
transcription initiation factor tfiid subunit 12maker-scaffold660_size117387-snap-gene-0.27gene
transcription initiation factor tfiid subunit 1 isoform x2maker-scaffold2286_size17589-snap-gene-0.4gene
transcription initiation factor tfiid subunit 2snap_masked-scaffold818_size92908-processed-gene-0.7gene
transcription initiation factor tfiid subunit 4maker-scaffold1830_size26949-snap-gene-0.6gene
transcription initiation factor tfiid subunit 6maker-scaffold609_size125094-snap-gene-0.17gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads