Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
transient receptor potential cation channel subfamily a member 1-like proteinmaker-scaffold33_size549341-snap-gene-4.33gene
transient receptor potential cation channel subfamily a member 1-like proteinmaker-scaffold28_size608977-snap-gene-2.12gene
transient receptor potential cation channel subfamily m member 3- partialmaker-scaffold611_size124749-snap-gene-0.16gene
transient receptor potential cation channel subfamily v member 6maker-scaffold1323_size47899-snap-gene-0.13gene
transient receptor potential channel pyrexiamaker-scaffold287_size221780-snap-gene-0.24gene
transient receptor potential channel pyrexiamaker-scaffold204_size260821-snap-gene-1.42gene
transient receptor potential channel pyrexia-likemaker-scaffold363_size195477-snap-gene-0.50gene
transient receptor potential-gamma proteinmaker-scaffold1971_size23625-snap-gene-0.3gene
transient receptor potential-gamma protein isoform x7maker-scaffold1971_size23625-snap-gene-0.2gene
transient receptor potential locus c proteinmaker-scaffold547_size140190-snap-gene-0.26gene
Transketolasemaker-scaffold1340_size46339-snap-gene-0.14gene
Transketolasemaker-scaffold389_size186684-snap-gene-0.28gene
translational activatormaker-scaffold204_size260821-snap-gene-1.47gene
translation elongation factor 2snap_masked-scaffold594_size129171-processed-gene-0.9gene
translation elongation factor 2 (ef-2 ef-g)maker-scaffold1441_size41149-snap-gene-0.0gene
translation elongation factor gmaker-scaffold688_size111304-snap-gene-0.0gene
translation elongation factor gmaker-scaffold1577_size35105-snap-gene-0.0gene
translation elongation factor gsnap_masked-scaffold856_size87843-processed-gene-0.15gene
translation factor mitochondrial-likesnap_masked-scaffold355_size198070-processed-gene-0.3gene
translation initiation factor eif-2b subunit delta-like isoform 1maker-scaffold82_size396747-snap-gene-1.15gene
translation initiation factor eif-2b subunit epsilonmaker-scaffold109_size355148-snap-gene-1.20gene
translation initiation factor eif-2b subunit gammamaker-scaffold104_size368486-snap-gene-2.29gene
translation initiation factor if-2maker-scaffold298_size217389-snap-gene-1.17gene
translation initiation factor if-2snap_masked-scaffold4417_size6008-processed-gene-0.1gene
translation initiation factor if-2maker-scaffold2717_size12909-snap-gene-0.0gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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