Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
translation initiation factor if-2maker-scaffold100_size373717-snap-gene-2.49gene
translation initiation factor if-2maker-scaffold1578_size34999-snap-gene-0.0gene
translation machinery-associated protein 20snap_masked-scaffold981_size73921-processed-gene-0.2gene
translation machinery-associated protein 7 homologmaker-scaffold761_size101412-snap-gene-0.20gene
translin-associated protein xmaker-scaffold69_size418775-snap-gene-2.25gene
translocating chain-associated membrane protein 1-like 1snap_masked-scaffold23_size669530-processed-gene-2.9gene
translocation protein sec62snap_masked-scaffold259_size234575-processed-gene-1.13gene
translocon-associated protein subunit alphamaker-scaffold462_size163801-snap-gene-0.51gene
translocon-associated protein subunit alpha isoform x2maker-scaffold462_size163801-snap-gene-0.49gene
translocon-associated protein subunit beta precursormaker-scaffold91_size383040-snap-gene-1.29gene
translocon-associated protein subunit delta-like (trap-delta)snap_masked-scaffold893_size84343-processed-gene-0.15gene
translocon-associated protein subunit gammamaker-scaffold124_size330879-snap-gene-1.23gene
transmembrane 9 superfamily member 2maker-scaffold592_size129239-snap-gene-0.20gene
transmembrane and coiled-coil domain-containing protein 7maker-scaffold1747_size29142-snap-gene-0.8gene
transmembrane and coiled-coil domain-containing protein 7maker-scaffold593_size129216-snap-gene-0.30gene
transmembrane and tpr repeat-containing protein 4-likesnap_masked-scaffold2248_size18162-processed-gene-0.4gene
transmembrane and tpr repeat-containing protein cg4050-likesnap_masked-scaffold193_size270907-processed-gene-1.15gene
transmembrane and tpr repeat-containing protein cg4050-likesnap_masked-scaffold954_size76946-processed-gene-0.15gene
transmembrane and tpr repeat-containing protein cg4341-likemaker-scaffold186_size273091-snap-gene-1.32gene
transmembrane bax inhibitor motif-containing protein 1maker-scaffold566_size135349-snap-gene-0.31gene
transmembrane bax inhibitor motif-containing protein 4maker-scaffold248_size238799-snap-gene-1.34gene
transmembrane channel-like protein 1maker-scaffold1312_size48844-snap-gene-0.10gene
transmembrane channel-like protein 3maker-scaffold631_size122145-snap-gene-0.36gene
transmembrane emp24 domain-containing protein 10snap_masked-scaffold2324_size17203-processed-gene-0.1gene
transmembrane emp24 domain-containing protein 10snap_masked-scaffold367_size194084-processed-gene-0.14gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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