Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
transmembrane emp24 domain-containing protein 2 precursormaker-scaffold795_size96016-snap-gene-0.22gene
transmembrane emp24 domain-containing protein 5maker-scaffold629_size122686-snap-gene-0.24gene
transmembrane emp24 domain-containing protein 5 precursormaker-scaffold34_size539781-snap-gene-2.10gene
transmembrane emp24 domain-containing protein 7 precursormaker-scaffold1518_size37722-snap-gene-0.15gene
transmembrane emp24 domain-containing protein 9maker-scaffold199_size265817-snap-gene-1.38gene
transmembrane protease serine 3-likemaker-scaffold870_size86522-snap-gene-0.20gene
transmembrane protease serine 9-likesnap_masked-scaffold203_size261420-processed-gene-1.2gene
transmembrane protease serine 9-likemaker-scaffold470_size172058-snap-gene-0.30gene
transmembrane protein maker-scaffold559_size137194-snap-gene-0.32gene
transmembrane protein maker-scaffold665_size116259-snap-gene-0.15gene
transmembrane protein snap_masked-scaffold145_size311916-processed-gene-2.8gene
transmembrane protein 104-like proteinsnap_masked-scaffold539_size142544-processed-gene-0.15gene
transmembrane protein 117-like isoform x2maker-scaffold182_size278544-snap-gene-0.10gene
transmembrane protein 120 homologmaker-scaffold52_size450388-snap-gene-3.19gene
transmembrane protein 129 precursormaker-scaffold2958_size11033-snap-gene-0.1gene
transmembrane protein 147maker-scaffold144_size312663-snap-gene-2.43gene
transmembrane protein 161b isoform x2maker-scaffold676_size113663-snap-gene-0.25gene
transmembrane protein 165snap_masked-scaffold18_size714446-processed-gene-6.0gene
transmembrane protein 170maker-scaffold380_size190731-snap-gene-0.46gene
transmembrane protein 17-likemaker-scaffold807_size94382-snap-gene-0.21gene
transmembrane protein 184b-like isoform x1snap_masked-scaffold541_size141817-processed-gene-0.19gene
transmembrane protein 195maker-scaffold109_size355148-snap-gene-0.15gene
transmembrane protein 198maker-scaffold340_size202118-snap-gene-1.23gene
transmembrane protein 20maker-scaffold17_size721972-snap-gene-0.17gene
transmembrane protein 20maker-scaffold628_size122696-snap-gene-0.30gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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