Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
transmembrane protein 208snap_masked-scaffold1635_size32709-processed-gene-0.9gene
transmembrane protein 214-amaker-scaffold128_size327099-snap-gene-2.15gene
transmembrane protein 254-likemaker-scaffold1060_size66001-snap-gene-0.10gene
transmembrane protein 32-b precursorsnap_masked-scaffold514_size150699-processed-gene-0.9gene
transmembrane protein 35maker-scaffold589_size129586-snap-gene-0.51gene
transmembrane protein 43maker-scaffold209_size256900-snap-gene-0.16gene
transmembrane protein 47-likemaker-scaffold84_size396325-snap-gene-2.49gene
transmembrane protein 59-likemaker-scaffold980_size74003-snap-gene-0.20gene
transmembrane protein 68-like isoform x1snap_masked-scaffold49_size462716-processed-gene-3.20gene
transmembrane protein 80snap_masked-scaffold1269_size51662-processed-gene-0.3gene
transmembrane protein 85maker-scaffold269_size230758-snap-gene-1.46gene
transmembrane protein 9-likemaker-scaffold89_size390429-snap-gene-2.28gene
transmembrane protein 9 precursorsnap_masked-scaffold713_size108309-processed-gene-0.6gene
transmembrane protein adipocyte-associated 1 homologmaker-scaffold360_size197209-snap-gene-0.36gene
transmembrane protein c18orf45snap_masked-scaffold228_size248166-processed-gene-1.1gene
transmembrane protein partialmaker-scaffold922_size80897-snap-gene-0.16gene
Transportin-3maker-scaffold183_size276960-snap-gene-1.22gene
transport protein sec61 subunit alphamaker-scaffold2346_size16788-snap-gene-0.6gene
transport protein sec61 subunit betamaker-scaffold1164_size58058-snap-gene-0.13gene
transposable element tcb2 transposasemaker-scaffold330_size203968-snap-gene-0.22gene
transposable element tcb2 transposasesnap_masked-scaffold534_size144770-processed-gene-0.19gene
transposasemaker-scaffold105_size367834-snap-gene-2.30gene
transposasemaker-scaffold212_size255419-snap-gene-1.33gene
transposasemaker-scaffold2174_size19379-snap-gene-0.4gene
transposasemaker-scaffold476_size161517-snap-gene-0.35gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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