Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
udp-n-acetylglucosamine 1-carboxyvinyltransferasesnap_masked-scaffold3992_size6957-processed-gene-0.4gene
udp-n-acetylglucosamine 1-carboxyvinyltransferasesnap_masked-scaffold2309_size17351-processed-gene-0.0gene
udp-n-acetylglucosamine 1-carboxyvinyltransferasemaker-scaffold9082_size2508-snap-gene-0.3gene
udp-n-acetylglucosamine 1-carboxyvinyltransferasemaker-scaffold8_size885657-snap-gene-1.0gene
udp-n-acetylglucosamine 2-epimerasemaker-scaffold240_size241964-snap-gene-0.9gene
udp-n-acetylglucosamine--dolichyl-phosphate n-acetylglucosaminephosphotransferasesnap_masked-scaffold422_size175911-processed-gene-0.13gene
udp-n-acetylglucosamine--peptide n-acetylglucosaminyltransferase 110 kda subunitmaker-scaffold316_size209483-snap-gene-1.36gene
udp-n-acetylglucosamine transferase subunit alg14 homologsnap_masked-scaffold316_size209483-processed-gene-1.5gene
udp-n-acetylglucosamine transporter-likemaker-scaffold595_size129005-snap-gene-0.23gene
udp-n-acetylmuramoylalanine--d-glutamate ligasemaker-scaffold1137_size60140-snap-gene-0.20gene
udp-n-acetylmuramoylalanine ligasemaker-scaffold266_size231069-snap-gene-1.25gene
udp-n-acetylmuramoylalanyl-d-glutamate-- -diaminopimelate ligasemaker-scaffold988_size73003-snap-gene-0.19gene
udp pyrophosphate synthasemaker-scaffold77_size404793-snap-gene-3.26gene
udp-sugar transporter ust74cmaker-scaffold137_size321222-snap-gene-2.19gene
udp-xylose and udp-n-acetylglucosamine transporter-likemaker-scaffold483_size159862-snap-gene-0.31gene
uhrf1-binding protein 1-like proteinmaker-scaffold11_size778918-snap-gene-6.50gene
ump-cmp kinasesnap_masked-scaffold784_size97500-processed-gene-0.24gene
unc-112-related proteinmaker-scaffold232_size243569-snap-gene-0.17gene
unc93-like protein mfsd11snap_masked-scaffold249_size238305-processed-gene-0.10gene
unc93-like protein mfsd11maker-scaffold178_size283195-snap-gene-1.37gene
uncharacterized fam18-like proteinmaker-scaffold757_size101632-snap-gene-0.28gene
uncharacterized fam18-like proteinmaker-scaffold941_size78300-snap-gene-0.17gene
uncharacterized glycosyltransferase aer61-likesnap_masked-scaffold295_size218279-processed-gene-1.20gene
uncharacterized membrane protein ddb_g0293934-like isoform x2snap_masked-scaffold100_size373717-processed-gene-0.3gene
uncharacterized mfs-type transportermaker-scaffold79_size400133-snap-gene-1.9gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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