Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
voltage-dependent calcium channel type d subunit alpha-1maker-scaffold81_size397536-snap-gene-2.23gene
voltage-dependent l-type calcium channel subunit alpha-1d isoform 1maker-scaffold338_size202645-snap-gene-1.19gene
voltage-dependent n-type calcium channel subunit alpha- partialsnap_masked-scaffold1550_size36032-processed-gene-0.4gene
voltage-dependent p q type calcium channelmaker-scaffold308_size214241-snap-gene-1.44gene
voltage-dependent p q-type calcium channel subunit alpha-1a-likemaker-scaffold308_size214241-snap-gene-1.42gene
voltage-dependent t-type calcium channel subunit alpha-1gmaker-scaffold300_size216557-snap-gene-0.14gene
voltage-gated calcium channel alpha 1 subunitmaker-scaffold81_size397536-snap-gene-2.22gene
voltage-gated calcium channel beta subunit transcript variant 1maker-scaffold367_size194084-snap-gene-0.42gene
voltage-gated channel maker-scaffold119_size336447-snap-gene-1.11gene
voltage-gated channel maker-scaffold269_size230758-snap-gene-1.29gene
voltage-gated potassiummaker-scaffold359_size197282-snap-gene-0.26gene
voltage-gated potassium channel subunit beta-2maker-scaffold627_size122700-snap-gene-0.33gene
voltage-gated sodium channelsnap_masked-scaffold524_size146631-processed-gene-0.3gene
voltage-sensor containing phosphatasemaker-scaffold587_size153100-snap-gene-0.27gene
vomeronasal type-2 receptor 26-likemaker-scaffold259_size234575-snap-gene-1.23gene
von willebrand factor a domain-containing protein partialsnap_masked-scaffold626_size122949-processed-gene-0.19gene
von willebrand factor type egf and pentraxin domain-containing protein 1maker-scaffold985_size73399-snap-gene-0.13gene
von willebrand factor type egf and pentraxin domain-containing protein 1maker-scaffold323_size206388-snap-gene-0.10gene
von willebrand factor type egf and pentraxin domain-containing protein 1maker-scaffold323_size206388-snap-gene-0.11gene
von willebrand factor type egf and pentraxin domain-containing protein 1maker-scaffold521_size146803-snap-gene-0.12gene
von willebrand factor type egf and pentraxin domain-containing protein 1maker-scaffold1823_size43701-snap-gene-0.7gene
von willebrand factor type egf and pentraxin domain-containing protein 1maker-scaffold203_size261420-snap-gene-0.14gene
von willebrand factor type egf and pentraxin domain-containing protein 1-likemaker-scaffold181_size278858-snap-gene-0.13gene
von willebrand factor type egf and pentraxin domain-containing protein 1-likesnap_masked-scaffold181_size278858-processed-gene-0.12gene
von willebrand factor type egf and pentraxin domain-containing protein 1-likemaker-scaffold171_size289870-snap-gene-0.5gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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