Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
zinc finger protein 704-likemaker-scaffold333_size203007-snap-gene-1.13gene
zinc finger protein 704-likemaker-scaffold515_size150689-snap-gene-0.29gene
zinc finger protein 704-likemaker-scaffold333_size203007-snap-gene-1.14gene
zinc finger protein 705a-like isoform x1snap_masked-scaffold1963_size23786-processed-gene-0.3gene
zinc finger protein 705a-like isoform x1snap_masked-scaffold3248_size9528-processed-gene-0.0gene
zinc finger protein 729-likemaker-scaffold336_size202805-snap-gene-1.35gene
zinc finger protein 729-likemaker-scaffold168_size293125-snap-gene-1.63gene
zinc finger protein 729-like isoform x6maker-scaffold111_size354240-snap-gene-2.27gene
zinc finger protein 778-likemaker-scaffold1562_size35716-snap-gene-0.4gene
zinc finger protein 778-likesnap_masked-scaffold1179_size56971-processed-gene-0.6gene
zinc finger protein 845-likesnap_masked-scaffold1245_size53493-processed-gene-0.2gene
zinc finger protein 850-likemaker-scaffold98_size375582-snap-gene-2.44gene
zinc finger protein 850-likesnap_masked-scaffold362_size196086-processed-gene-0.2gene
zinc finger protein 850-likesnap_masked-scaffold924_size80766-processed-gene-0.7gene
zinc finger protein 850-likemaker-scaffold175_size286436-snap-gene-1.44gene
zinc finger protein 850-like isoform x2maker-scaffold76_size406464-snap-gene-2.16gene
zinc finger protein 850-like isoform x3snap_masked-scaffold285_size222332-processed-gene-1.4gene
zinc finger protein 879- partialmaker-scaffold25_size650667-snap-gene-0.18gene
zinc finger protein 883-likesnap_masked-scaffold1099_size62903-processed-gene-0.11gene
zinc finger protein 883-likemaker-scaffold250_size238258-snap-gene-1.18gene
zinc finger protein 891maker-scaffold285_size222332-snap-gene-1.16gene
zinc finger protein 91-likemaker-scaffold999_size72078-snap-gene-0.12gene
zinc finger protein 91- partialmaker-scaffold414_size178625-snap-gene-0.32gene
zinc finger protein and btb domain-containingsnap_masked-scaffold1613_size33651-processed-gene-0.4gene
zinc finger protein and btb domain-containingsnap_masked-scaffold41_size498431-processed-gene-0.9gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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