Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
actin-related proteinmaker-scaffold264_size232020-snap-gene-1.12gene
actin-related protein 10snap_masked-scaffold1806_size27391-processed-gene-0.4gene
actin-related protein 2snap_masked-scaffold1282_size50771-processed-gene-0.3gene
actin-related protein 2 3 complex subunit 1amaker-scaffold1882_size25737-snap-gene-0.8gene
actin-related protein 2 3 complex subunit 1amaker-scaffold618_size123335-snap-gene-0.27gene
actin-related protein 2 3 complex subunit 2snap_masked-scaffold691_size110934-processed-gene-0.18gene
actin-related protein 2 3 complex subunit 3snap_masked-scaffold380_size190731-processed-gene-0.8gene
actin-related protein 2 3 complex subunit 4maker-scaffold547_size140190-snap-gene-0.30gene
actin-related protein 2 3 complex subunit 5maker-scaffold51_size454968-snap-gene-3.31gene
actin-related protein 3maker-scaffold791_size96783-snap-gene-0.26gene
actin-related protein 5snap_masked-scaffold704_size109063-processed-gene-0.8gene
actin-related protein 6snap_masked-scaffold1668_size31705-processed-gene-0.0gene
actin-related protein 8-likemaker-scaffold604_size126151-snap-gene-0.27gene
activated cdc42 kinase 1snap_masked-scaffold906_size82779-processed-gene-0.3gene
activated rna polymerase ii transcriptional coactivator p15maker-scaffold430_size173499-snap-gene-0.48gene
activating molecule in becn1-regulated autophagy protein 1maker-scaffold1362_size45580-snap-gene-0.14gene
activating signal cointegrator 1 complex subunit 3maker-scaffold337_size202799-snap-gene-1.20gene
activating signal cointegrator 1 complex subunit 3maker-scaffold337_size202799-snap-gene-1.21gene
activating signal cointegrator 1 complex subunit 3-likemaker-scaffold953_size76948-snap-gene-0.11gene
activating signal cointegrator 1-likemaker-scaffold382_size189932-snap-gene-0.24gene
activating transcription factor 1maker-scaffold129_size324999-snap-gene-1.25gene
activator of 90 kda heat shock protein atpase homolog 1snap_masked-scaffold912_size81766-processed-gene-0.11gene
activator of basal transcription 1maker-scaffold275_size226830-snap-gene-0.24gene
activin receptor type-1maker-scaffold791_size96783-snap-gene-0.30gene
activin receptor type-2b-likemaker-scaffold187_size272365-snap-gene-0.18gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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