Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
activin receptor type isnap_masked-scaffold98_size375582-processed-gene-0.0gene
acyl- -binding acbpmaker-scaffold286_size222086-snap-gene-0.16gene
acyl- -binding domain-containing protein 5-like isoform x1maker-scaffold807_size94382-snap-gene-0.20gene
acyl- -binding protein homologmaker-scaffold406_size180810-snap-gene-0.21gene
acyl- -binding protein homologsnap_masked-scaffold1123_size61443-processed-gene-0.15gene
acyl- -binding protein homologsnap_masked-scaffold753_size102382-processed-gene-0.15gene
acyl carrier mitochondrial-likemaker-scaffold807_size94382-snap-gene-0.14gene
acyl carrier proteinmaker-scaffold254_size236139-snap-gene-0.8gene
acyl-coenzyme a oxidase peroxisomalmaker-scaffold1124_size61417-snap-gene-0.10gene
acyl-coenzyme a oxidase peroxisomalmaker-scaffold631_size122145-snap-gene-0.40gene
acyl- dehydrogenasemaker-scaffold32_size558451-snap-gene-4.2gene
acyl- dehydrogenasemaker-scaffold463_size163741-snap-gene-0.7gene
acyl- dehydrogenasemaker-scaffold600_size127300-snap-gene-0.5gene
acyl- dehydrogenasemaker-scaffold701_size109406-snap-gene-0.2gene
acyl- dehydrogenasemaker-scaffold955_size76929-snap-gene-0.18gene
acyl- dehydrogenasesnap_masked-scaffold10652_size2159-processed-gene-0.0gene
acyl- dehydrogenasesnap_masked-scaffold2534_size14769-processed-gene-0.6gene
acyl- dehydrogenasesnap_masked-scaffold2_size2283618-processed-gene-14.17gene
acyl- dehydrogenasesnap_masked-scaffold708_size108518-processed-gene-0.11gene
acyl- dehydrogenasesnap_masked-scaffold7580_size3107-processed-gene-0.1gene
acyl- dehydrogenasesnap_masked-scaffold8023_size2899-processed-gene-0.1gene
acyl- dehydrogenase domain-containing proteinmaker-scaffold1871_size25962-snap-gene-0.0gene
acyloxyacyl hydrolase-likesnap_masked-scaffold106_size358372-processed-gene-1.9gene
acyl-protein thioesterase 1maker-scaffold1462_size40154-snap-gene-0.11gene
acyl-protein thioesterase 1maker-scaffold1632_size32774-snap-gene-0.8gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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