Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
a disintegrin and metalloproteinase with thrombospondin motifs 7 isoform x2maker-scaffold295_size218279-snap-gene-1.25gene
a disintegrin and metalloproteinase with thrombospondin motifs 9maker-scaffold19_size710362-snap-gene-3.7gene
adp atp translocase 1maker-scaffold82_size396747-snap-gene-2.31gene
adp-dependent glucokinasemaker-scaffold122_size333723-snap-gene-2.30gene
adp-ribose mitochondrial-likemaker-scaffold1082_size63748-snap-gene-0.16gene
adp-ribosylation arfmaker-scaffold22_size673200-snap-gene-1.15gene
adp-ribosylation factor 1maker-scaffold425_size175135-snap-gene-0.36gene
adp-ribosylation factor 4 isoform x2maker-scaffold1691_size31027-snap-gene-0.8gene
adp-ribosylation factor 4 isoform x2maker-scaffold2980_size10911-snap-gene-0.3gene
adp-ribosylation factor-binding protein gga3-like isoform x2maker-scaffold77_size404793-snap-gene-0.17gene
adp-ribosylation factor gtpase-activating protein 1maker-scaffold292_size219010-snap-gene-1.36gene
adp-ribosylation factor gtpase-activating protein 1maker-scaffold292_size219010-snap-gene-1.46gene
adp-ribosylation factor gtpase-activating protein 1-like isoform x3maker-scaffold396_size184579-snap-gene-0.24gene
adp-ribosylation factor gtpase-activating protein 2maker-scaffold408_size180710-snap-gene-0.28gene
adp-ribosylation factor-like 4asnap_masked-scaffold444_size168727-processed-gene-0.1gene
adp-ribosylation factor-like 4asnap_masked-scaffold809_size94238-processed-gene-0.12gene
adp-ribosylation factor-like protein 2-bindingmaker-scaffold176_size284796-snap-gene-1.22gene
adp-ribosylation factor-like protein 4asnap_masked-scaffold444_size168727-processed-gene-0.19gene
adp-ribosylation factor-like protein 4asnap_masked-scaffold809_size94238-processed-gene-0.2gene
adp-ribosylation factor-like protein 6maker-scaffold372_size192401-snap-gene-0.47gene
adp-ribosylation factor-like protein 6-interacting protein 1maker-scaffold856_size87843-snap-gene-0.18gene
adp-ribosylation factor-like protein 8bsnap_masked-scaffold9_size846264-processed-gene-7.23gene
adp-ribosylation factor-related protein 1maker-scaffold564_size136232-snap-gene-0.29gene
adrenodoxin-like mitochondrial-likemaker-scaffold90_size386344-snap-gene-1.19gene
af109920_1alpha-amidating enzyme precursor 2maker-scaffold428_size174301-snap-gene-0.22gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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